Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02945 ATGGGGAAAAAGGGAAATTGGTTTTCTACTGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCAAGTAAACCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGACCCTTCCTTAGAAGATACAGCACCGCCGCTTCCTTCACCGGAAGATGTTAGATTAACTGATATTGAAAACCAAAACAATCACCATCATGTTCCTGAAATTACAGCTGTTGTAGTTACTGAGGACCCTGGTCCTTCTGTTCCGGCACCAGTTGTTAGAACTGAAGCTTCTGTCGTGGCTCATTTTGCTGGTAAACCAAAGGATGAAGTTGCGGCAATCAAGATTCAGACAGCTTTTCGTGGATACTTGGCACGAAGAGCGTTGCGGGCTTTAAGAGGGTTGGTCAGATTGAAAACATTGATGGAAGGGCCGATTGTGAAACGCCAGGCCATGAGTACCCTCCGCTCAATGCAGACGTTAGCTCGTGTGCAATCTCAGATTCGTTCCAGGAGAGTCAGAATGTTAGAAGAGAATCAGGCTTTGCAGAGACAGCTCTTACAGAAGCATGTGAGAGAGCTCGAGACCGTGCGGATTGGAGAAGAATGGGATGATAGCCTACAATCAAAAGAACAAATTGAAGCCAAATTAATGAGCAAGTATGAGGCTACTATGAGACGAGAAAGAGCAATGGCTTATGCATTCACTCATCAGCAAAACGGGAAGAACTCGTCTAGACCTATGAATCCAATGTTCGTGGATCCAACCAATCCTACGTGGGGCTGGAGCTGGCTTGAACGATGGATGGCTGCCCGACCTTGGGAGAGCCGCGGTCTTATGGATAAAGAACTGAATGACCATTCATCTGTTAAAAGTTCAAGCCGCAGCATTACAGGTGGAGAAATCAGCAAATCATTTGCCCGTTTCCAGCTGAATTCCGAAATACATTCTCCAGCAGCCAGCCAAAACCCAGGCTCGCCGAGCTTTCAGTCAAATTCAACAACACCTAAGCCAGCTTCTGGATCAGTCGTGAGGAAACTGAAGAAGGCGAGTCCAAAGGGAAGCTGGGTTATGGAAGAAGACTCCAAAAGCATGGCCAGTGTACAGTCAGATCGCTTCCGTAGGCACTCTATTGCCGGATCATCAGTTAGAGACGACGAGAGTCTCGCTAGCTCTCCATCAGTTCCAAGCTATATGGTGCCGACTCAATCTGCGAAAGCTAGGGCTAGGACACAAAGTCAAAGTCCATTAGCTAAAGAAAACGGAAAACAAGAGAAGGGCTCCTTTGGGACCGCAAAGAAGCGTCTTTCTTTCCCAGCTTCGCCTGCCAGGCCAAGGCGTCATTCAGGTCCACCGAAGGTAGAAATCGCCATAAATGCAGAGGTCAGTGTGGACAATGGTGTGACCAGTTGA 1404 0.4722 MGKKGNWFSTVKKALSPDSKKSSKPKKKWFGKQKLQTSDPSLEDTAPPLPSPEDVRLTDIENQNNHHHVPEITAVVVTEDPGPSVPAPVVRTEASVVAHFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHVRELETVRIGEEWDDSLQSKEQIEAKLMSKYEATMRRERAMAYAFTHQQNGKNSSRPMNPMFVDPTNPTWGWSWLERWMAARPWESRGLMDKELNDHSSVKSSSRSITGGEISKSFARFQLNSEIHSPAASQNPGSPSFQSNSTTPKPASGSVVRKLKKASPKGSWVMEEDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARARTQSQSPLAKENGKQEKGSFGTAKKRLSFPASPARPRRHSGPPKVEIAINAEVSVDNGVTS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02945 467 Gene3D - 63 136 - -
Vifa5g02945 467 Pfam Protein of unknown function (DUF4005) 382 442 IPR025064 -
Vifa5g02945 467 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Vifa5g02945 467 MobiDBLite consensus disorder prediction 314 337 - -
Vifa5g02945 467 MobiDBLite consensus disorder prediction 381 418 - -
Vifa5g02945 467 SMART iq_5 105 127 IPR000048 GO:0005515
Vifa5g02945 467 MobiDBLite consensus disorder prediction 314 467 - -
Vifa5g02945 467 Pfam IQ calmodulin-binding motif 109 127 IPR000048 GO:0005515
Vifa5g02945 467 PANTHER IQ-DOMAIN 5-RELATED 1 438 - -
Vifa5g02945 467 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02945 Vifa-Chr5 971497965 971500547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02945 1 467 IQD Protein Family AT5G03040 52.479 2.15e-145 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02945 - - gmx:100800080 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02945 5 971497965 971500547 Vifa5g02945 5 971497965 971500547 ECH
Vifa5g02945 5 971497965 971500547 Vifa3g01117 3 293066642 293068873 PCT