Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02929 ATGAGAACCTTAAGAAGCTTCGATGGCTTCCCTTTAAATTTGAGCAACTTCTATGGTGGCTGCGCTATTCTTCTTCTTCTTCTTCTTGTTACTTTATTGTTTCTTCTGAACCGTAAGAGCAGATCCTTGTTGGCGTCCTCTTTGATCTCCGATTCTAGCAATTTAAACCCAAGGGTTTACAATTGCAGAACCTCAAACACTGTCACTGATGCTGATTTGAAGTTTTTAATGGATGAAATTCTAAATCAGAACCATAAATGGGAGGATGTCATAGATAAAACAAATCATCATCTATGCTACAAAGCTAAATCCACCAAACCTAAGAATGGTCCCCTGAAATATTGGAGTATGACTGTGTTCAATGATATTTCCGCCGAGATGCTAAGAAACTTCTACATGGACAATCACTACAGAAAGCAATGGGATAACACTGTGGTCGAACACAATCAGCTGCAGCTGGATGAATCTGATGGTTCTGAAGTTGGTCGTACAGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGTTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGTAACTTTTCTCTTCCACTTGCTTCGCTGCTCTTCAAGACATTGA 1203 0.4281 MRTLRSFDGFPLNLSNFYGGCAILLLLLLVTLLFLLNRKSRSLLASSLISDSSNLNPRVYNCRTSNTVTDADLKFLMDEILNQNHKWEDVIDKTNHHLCYKAKSTKPKNGPLKYWSMTVFNDISAEMLRNFYMDNHYRKQWDNTVVEHNQLQLDESDGSEVGRTGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGVVGLAAAEGARISGASRIIGVDLVSSRFELAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVTFLFHLLRCSSRH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02929 400 Pfam Alcohol dehydrogenase GroES-like domain 167 269 IPR013154 -
Vifa5g02929 400 SUPERFAMILY Bet v1-like 70 156 - -
Vifa5g02929 400 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 175 189 IPR002328 GO:0008270|GO:0016491
Vifa5g02929 400 ProSiteProfiles START domain profile. 76 161 IPR002913 GO:0008289
Vifa5g02929 400 Gene3D - 169 288 - -
Vifa5g02929 400 Gene3D - 289 342 - -
Vifa5g02929 400 Gene3D - 360 394 IPR036621 -
Vifa5g02929 400 SUPERFAMILY Class II aaRS and biotin synthetases 342 376 IPR045864 -
Vifa5g02929 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 275 343 IPR036291 -
Vifa5g02929 400 PANTHER ALCOHOL DEHYDROGENASE 162 342 - -
Vifa5g02929 400 FunFam alcohol dehydrogenase 1-like isoform X1 143 288 - -
Vifa5g02929 400 SUPERFAMILY GroES-like 166 293 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02929 Vifa-Chr5 965499072 965502824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02929 170 361 Monolignol Biosynthesis Gene Families AT1G72680 27.835 1.25e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02929 K18857 - gmx:100801918 332.798