Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02926 ATGAGTGATGAGTTGTCACTCTTGCACATGGGTATTTCTAGCTGTTGGGTTTATCATCATCAATCACAAAGATACAAGATGGCGGTTCCATTGCTAACCAAAAAGATTATCAAGAAGCGTGTCAAGAGGTTCATTAGGCCTCAAAGTGACAGGAGAATATGTGTCAAGGAAAGTTGGCGCAGGCCAAAGGGTATTGACTCACGTGTTAGGAGAAAATTCAAAGGAGTTACTTTGATGCCAAACATTGGTTATGGTTCAGACAAGAAGACCCGCCACTATCTGCCTAACGGATTCAAAAAGTTTGTTGTCCACAATGTCAAGGATCTAGAACTCCTCATGATGCATAACAGAACATACTGTGCTGAGATAGCACACAATGTGTCGACCAGGAAAAGAAAGGAAATCGTTGAACGTGCAGCACAATTGGATGTTGTTGTCACAAACAAACTGGCCAGGTTGCGCAGCCAAGAGGACGAATGA 480 0.4292 MSDELSLLHMGISSCWVYHHQSQRYKMAVPLLTKKIIKKRVKRFIRPQSDRRICVKESWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02926 159 CDD Ribosomal_L32_L32e 44 148 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02926 159 SMART Ribosomal_L32e_2 41 148 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02926 159 SUPERFAMILY Ribosomal protein L32e 19 157 IPR036351 -
Vifa5g02926 159 Pfam Ribosomal protein L32 42 148 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02926 159 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 27 159 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02926 Vifa-Chr5 964278553 964282023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02926 27 159 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 89.474 6.58e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02926 K02912 - aof:109837658 245.743