Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02925 ATGAGTGATGAGTTGTCACTCTTGCACATGGGTATTTCTCATCATCAATCACAAAGATACAAGATGGCGGTTCCATTGCTAACCAAAAAGATTATCAAGAAGCGTGTCAAGAGGTTCATTAGGCCTCAAAGTGACAGGAGAATATGTGTCAAGGAAAGTTGGCGCAGGCCAAAGGGTATTGACTCACGTGTTAGGAGAAAATTCAAAGGAGTTACTTTGATGCCAAACATTGGTTATGGTTCAGACAAGAAGACCCGCCACTATCTGCCTAACGGATTCAAAAAGTTTGTTGTCCACAATGTCAAGGATCTAGAACTCCTCATGATGCATAACAGAACATACTGTGCTGAGATAGCACACAATGTGTCGACCAGGAAAAGAAAGGAAATCGTTGAACGTGCAGCACAATTGGATGTTGTTGTCACAAACAAACTGGCCAGGTTGCGCAGCCAAGAGGACGAATGA 465 0.4301 MSDELSLLHMGISHHQSQRYKMAVPLLTKKIIKKRVKRFIRPQSDRRICVKESWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02925 154 SMART Ribosomal_L32e_2 36 143 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02925 154 CDD Ribosomal_L32_L32e 39 143 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02925 154 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 22 154 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02925 154 Pfam Ribosomal protein L32 37 143 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g02925 154 SUPERFAMILY Ribosomal protein L32e 16 152 IPR036351 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02925 Vifa-Chr5 963970093 963973356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02925 22 154 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 89.474 4.32e-89 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02925 K02912 - aof:109837658 245.743