Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02921 ATGCACCGTACTGCAGAAATGACGGAGCAGAGAATCCGGCATGGATCCGGATCATTTTCCATGGATTCATTCGAGTTAATGGACTTTTACTTCCCTCAACAACTCTTCACCGTCGAGAAAACCTGGCTCAGTCTCACATCTTCTCTTTTTTCTTTCTTTTCTTCTCCACAAGGCCAAAACCTTGCTTCTCAGGTGAAAAATGAGTATGGAAACTATGTATTGCCACTTGATTTTCAGCAGCTCAAAAATTTGTGTCGTGTTGAGGAATTTTATGCAATGTTATTGGAGAAACCCAAAGTTGCTCTCTTATGCATGAGTGTTGCTGTTCACAAGGTTTTGCTTTCTAAATGGGAGAGTGACAAGATGGAGCTTTCTGCCAAAGTAGACATCCGTCTTCATAACTATCCTGAAACCATGATTGCGTTGAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTGCGTGGTACCGCTGTGAAAGCCAGCACCGTCAGGCCTCTTGTGGTAGAGATGAGTTTTGAATGCAGTAAGTGCAAACAAAGCATTACACGTATATTTCCTGATGGAAAATTCTCACCACCATCAACTTGCAATTTGAATGGATGCAAAAGCAAAATCTTCAATCCATTGCGATCTACTGCTCAGACTATTGATTTTCAGAAAATAAGGGTTCAAGAATTATTAAAGCATGAAGATCATGAGGAAGGACGAGTGCCTCGAACAGTGGAATGTGAACTTACCCAAGATCTTGTTGATTCATGCATTCCTGGAGATGTGGTGACAGTTACTGGAATTATCAGAGGAATTAACAATTACATGGATATTGGAGGCGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATCCATTATGAATTCAAAGTCACAGTCCATACCTGAGGATTCACAAGACTCTAATGCCAAAGCTAGACCAACCGAGCTGTTTGACTTGTTTTCATTTTCATTAAAGGATTTAGAATTTATTGTGAAATTTGCAGAGGAGCATGGTTCAGATTTGTTTCGGCAAATCCTTAACTCTATATGCCCTTCCATCTATGGACACGAGCTTGTTAAAGCTGGGATAACTCTTGCATTATTTGGTGGTGTACGAAGGCATTCTATGGATCAGAATAAGGTACCTGTGAGGGGAGATATTCATGTCATGATTGTAGGCGACCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAACGCAACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAATGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAGGCAATGGAGCAACAATGTGTCTCTATTGCAAAGGCGGGATTGGTAGCAAGTTTATCATCCCGGACTTCTGTTTTAGCCGCTGCAAATCCCGTTGGTGGTCATTATAACCGGGCAAAAACTCCTGATGAACTTTTGGACAAACGAGTCTCGGAGCACATTATGTCACTTCATACTGGGTGCGGCCAACACTCACAGGCATCTAAAAAGCGACGTGGAGATCCACCTTCTGATTCAAGAGCTTCTGCATCACAGAATGTTGAAGGGGTAGATTTGGGTGCTAGATCTGGTTCTTTAATTTCAAAGTTGAAACTTGACAGACGAAGAGACAATGATTTTGTTCCTTTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGAAGTTTTGTCTTTCCTAGGATGTCCAAGCCAGCAGCAGACATCATACAAAAGTTTTATCTAAAACTTAGAGATCATAACGTTTCGGCTGATGGTACTCCTATAACAGCAAGGCAATTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGTGCTCGGCTGGACTTGAGAGTAGAAATAACTACACAGGATGCAATGGATGCTGTTGAAATCATGAAGGAATCCCTGTATGACAAATATGTTGACGAACACGGTGTTGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAAGCAAAACGTTTTCTAAATGCCCTTAATAAGCAATCGGAGCTGGAACAGAAAGATTTATTTTCAGTATCTGAAATGTACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATGTGGATACTTTCATCGATAATTTAAACAGCGTTGGTTACATACTTAAAAAAGGACCAAAGACATACCAGGTGTTATCGTCTTCTTACTCGCGGAGCCAATCGACTAGGTCACGGTGCTAA 2346 0.4182 MHRTAEMTEQRIRHGSGSFSMDSFELMDFYFPQQLFTVEKTWLSLTSSLFSFFSSPQGQNLASQVKNEYGNYVLPLDFQQLKNLCRVEEFYAMLLEKPKVALLCMSVAVHKVLLSKWESDKMELSAKVDIRLHNYPETMIALKNLKAAYIDKLVSVRGTAVKASTVRPLVVEMSFECSKCKQSITRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDSCIPGDVVTVTGIIRGINNYMDIGGGKSKNKNQGFYYLYLEAVSIMNSKSQSIPEDSQDSNAKARPTELFDLFSFSLKDLEFIVKFAEEHGSDLFRQILNSICPSIYGHELVKAGITLALFGGVRRHSMDQNKVPVRGDIHVMIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTPDELLDKRVSEHIMSLHTGCGQHSQASKKRRGDPPSDSRASASQNVEGVDLGARSGSLISKLKLDRRRDNDFVPLPGQLLRKYIAYARSFVFPRMSKPAADIIQKFYLKLRDHNVSADGTPITARQLESLVRLAEARARLDLRVEITTQDAMDAVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDLFSVSEMYSLADRISLKVPDVDTFIDNLNSVGYILKKGPKTYQVLSSSYSRSQSTRSRC 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02921 781 ProSiteProfiles MCM family domain profile. 348 524 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 Coils Coil 463 483 - -
Vifa5g02921 781 CDD MCM8_WHD 702 767 - -
Vifa5g02921 781 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 Pfam MCM OB domain 142 270 IPR033762 -
Vifa5g02921 781 Gene3D - 142 271 IPR012340 -
Vifa5g02921 781 SMART AAA_5 392 538 IPR003593 GO:0016887
Vifa5g02921 781 SUPERFAMILY Nucleic acid-binding proteins 68 272 IPR012340 -
Vifa5g02921 781 FunFam Retrovirus-related Pol polyprotein LINE-1 327 480 - -
Vifa5g02921 781 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 67 718 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 MobiDBLite consensus disorder prediction 536 565 - -
Vifa5g02921 781 Pfam MCM AAA-lid domain 597 680 IPR041562 -
Vifa5g02921 781 Gene3D - 169 219 - -
Vifa5g02921 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 686 IPR027417 -
Vifa5g02921 781 SMART mcm 138 681 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa5g02921 781 CDD MCM8 352 679 - -
Vifa5g02921 781 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Vifa5g02921 781 Gene3D - 326 689 IPR027417 -
Vifa5g02921 781 Pfam MCM P-loop domain 345 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02921 Vifa-Chr5 963506300 963513862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02921 36 767 Core DNA Replication Machinery Family AT3G09660 69.485 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02921 K10737 - gmx:100784549 1257.66