Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02918 ATGGGGAGTTCTATACTCTTCTTCTTCCTCCTCTTCTCACCTTCACTCTTTCTCCTTCTCCCTTTTTCATCTTCTCAGATCATGCAAGGTTTTGTAAGTTTGGACTGTGGAGGCACAGAAAGTTTCACTGATGAAATTGGTCTTGATTGGACTCCTGATAATAAGCTTACATATGGAGAAATAGCTACTATATCTGTTGCGAACCAGACGCGAAAGCAATACACGACGTTGCGATATTTTCCTGCTGATTCTAGGAAATATTGTTACACTCTTGATGTTATTGGTAGGACGAGGTATTTGTTAAGGGCGACTTTCCTGTATGGGAATTTTGATAAGAACAATGTTTATCCTAAATTTGATGTTTCTGTTGGAGCTACACATTGGTCTACTATTGTTATATCGGATGCTGATAGTGTAGAAATGAGAGAGCTTATATTTCTGGCTTCCAGTTCAAGTGTCAGTGTGTGTTTATCTAATGCAACAACTGGACAGCCGTTTCTATCTACGCTCGAGCTTCGACAATTCAATGGTTCCGTTTATTTTACAGAATTTGAGAAACAGTTTTATCTGAGTGTTTCTGCAAGGATCAATTTTGGTGCAGAGAGTGATGCTCCAATCAGGTACCCTGATGATCCTTTTGATAGAATTTGGATGTCGGATTCTGTTAAGAAAGCAAATTATCTTGTTGATGTTGCTGCTGGAACTGAGAAAATTTCTACCAATGAACCAATTTTTGTTAACCGAGATGATATACCACCGATGAAAGTGATGCAGACAGCGGTAGTAGGTACAAATGGATCTCTAACTTACCGGTTGAATTTGGATGGTTTTCCTGGCACTGCTTGGGCAGTCACCTATTTTGCAGAGATTGAAGATTTGCGTCCAAATGAGTCTAGAAAATTCAGGCTTTTGCTTCCGGGCCAGCCTGAAATTAGCAAGATTATTGTAAATATTGACGAAAATGCTCTAGGGAAATATCGCCTTTATGAACCGGGATTTGTCAATCTAACCCTACCTTTTGTGCTTTCCTTTAAATTCGCCAAGACATCTGATTCGTCCAAGGGGCCTCTCCTTAATGCCATGGAGATAAATAAGTATCTCGAGATAAATAATGGTTCACCAGATGTTGAAGCTATTTCTGGAGTGCTTTCTCGCTACTCTTCAGCAAACTGGACACAAGAAGGAGGTGATCCATGTCTTCCTGTTTCCTGGTCATGGATCCACTGTAGCTCAGATCCACAACCAAGAATAATTTCAATCTTGTTATCGAGTAAAAACTTGACTGGAAATATTCCTTCAGATATTACCAAATTGGTTGGTCTGGTTGAACTATGGCTTGATGGAAATATGTTGACTGGCCCAATACCCGATTTTACTGGGTGCATGGACTTAAAGATCATCCATCTTGAAAATAATCAGTTCACTGGTACGCTCCCAGCCTCTTTGGTGAACCTTCCGAGTTTGAGGGAACTATACGTTCAAAATAATATGTTATCTGGAGCAGTACCGCCAGAGCTTCTAAGCAAGAATTTAGTTTTAAATTACTCCGGAAACATTAATCTTCATAGAGGAAGCAAAACAAAGAGCCACATATATATTATTATTGGTTCAGCAGTAGGGGCTTCTGTTCTGCTTTTGGCTACTGTTATATCTTGCTTGGTTATGCGCAAAGGCAAGAAAAGATATTATGAGAAAGACCACATAGTTTCTGTCCCTACTCAAAGGCCAGCTTCTTGGAAGAGTGATGATCCTGCAGAATCGGCTCACTGTTTCAGCTTAGCTGAAATTGAAAGTGCTACAAACAACTTTGAGAAAAGAATCGGTTCCGGTGGTTTTGGAATTGTATACTATGGAAAACTGAAAGAAGGAAAAGAGATAGCAGTTAAAGTTCTTAGGAATAATTCCTATCAAGGCAAGCGTGAGTTCTCCAATGAGGTGACTCTTCTATCAAGAATACATCACAGAAACTTGGTGCAACTTCTTGGGTATTGTCGAGAAGAAGATAATAGTATTCTTGTGTACGAGTTCATGCATAATGGCACACTCAAGGAACATCTATATGGCCCTTTAGTGCACGGACAAAGTATCAGTTGGATTAAGCGCCTTGAGATTGCAGAAGACTCTGCCAAAGGAATTGAATACCTTCATACAGGTTGTGTTCCTGTAGTAATTCATAGAGACTTGAAAAGTAGCAATATTCTTCTCGACACACACATGAGAGCCAAGGTTTCAGATTTCGGTCTTTCCAAACTTGCTGTTGATGGAGTCTCCCATGTTTCAAGCATAGTTCGCGGAACAGTAGGATACCTGGATCCTGAGTACTATATTTCCCAACAGCTAACTGACAAGAGTGATGTTTATAGCTTTGGTGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCAAATGAAAGTTTCGGGATTCATTGTCGAAACATAGTTCAATGGGCAAAATTGCACATTGAGAGTGGAGATATACAAGGCATTATTGATCCCTTACTAGGAAACAACTATGATCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAACCTCATGGAGATATGCGTCCATCGATTTCGGAAGTTTTAAAGGAGATCCAAGATGCAATATCTATTGAGAGAGAAGCTGAAACATTAAGAGAATGCAATTCTGATGAGGTTTCAAGAAATTCTTTTCATTCTTCCATGAACATAGGCTCAATGGATCTTGGTAGAGTCGAGAGTTTCCTTTCGATTGATGAATCCATTGCGCAACCAACGGCAAGATAG 2790 0.3961 MGSSILFFFLLFSPSLFLLLPFSSSQIMQGFVSLDCGGTESFTDEIGLDWTPDNKLTYGEIATISVANQTRKQYTTLRYFPADSRKYCYTLDVIGRTRYLLRATFLYGNFDKNNVYPKFDVSVGATHWSTIVISDADSVEMRELIFLASSSSVSVCLSNATTGQPFLSTLELRQFNGSVYFTEFEKQFYLSVSARINFGAESDAPIRYPDDPFDRIWMSDSVKKANYLVDVAAGTEKISTNEPIFVNRDDIPPMKVMQTAVVGTNGSLTYRLNLDGFPGTAWAVTYFAEIEDLRPNESRKFRLLLPGQPEISKIIVNIDENALGKYRLYEPGFVNLTLPFVLSFKFAKTSDSSKGPLLNAMEINKYLEINNGSPDVEAISGVLSRYSSANWTQEGGDPCLPVSWSWIHCSSDPQPRIISILLSSKNLTGNIPSDITKLVGLVELWLDGNMLTGPIPDFTGCMDLKIIHLENNQFTGTLPASLVNLPSLRELYVQNNMLSGAVPPELLSKNLVLNYSGNINLHRGSKTKSHIYIIIGSAVGASVLLLATVISCLVMRKGKKRYYEKDHIVSVPTQRPASWKSDDPAESAHCFSLAEIESATNNFEKRIGSGGFGIVYYGKLKEGKEIAVKVLRNNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEDNSILVYEFMHNGTLKEHLYGPLVHGQSISWIKRLEIAEDSAKGIEYLHTGCVPVVIHRDLKSSNILLDTHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGIHCRNIVQWAKLHIESGDIQGIIDPLLGNNYDLQSMWKIAEKALMCVQPHGDMRPSISEVLKEIQDAISIEREAETLRECNSDEVSRNSFHSSMNIGSMDLGRVESFLSIDESIAQPTAR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02918 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Vifa5g02918 929 SUPERFAMILY L domain-like 401 518 - -
Vifa5g02918 929 Gene3D - 191 366 - -
Vifa5g02918 929 ProSiteProfiles Protein kinase domain profile. 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02918 929 PANTHER OS07G0107800 PROTEIN-RELATED 464 877 - -
Vifa5g02918 929 FunFam Leucine-rich repeat receptor-like protein kinase 579 676 - -
Vifa5g02918 929 SMART serkin_6 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02918 929 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Vifa5g02918 929 Gene3D Phosphorylase Kinase; domain 1 575 676 - -
Vifa5g02918 929 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 414 502 - -
Vifa5g02918 929 Gene3D Ribonuclease Inhibitor 377 530 IPR032675 -
Vifa5g02918 929 CDD STKc_IRAK 607 874 - -
Vifa5g02918 929 SUPERFAMILY Protein kinase-like (PK-like) 586 874 IPR011009 -
Vifa5g02918 929 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 677 886 - -
Vifa5g02918 929 Pfam Malectin-like domain 34 364 IPR024788 -
Vifa5g02918 929 Pfam Protein tyrosine and serine/threonine kinase 603 803 IPR001245 GO:0004672|GO:0006468
Vifa5g02918 929 Gene3D Transferase(Phosphotransferase) domain 1 677 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02918 Vifa-Chr5 962807907 962812346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02918 23 711 Receptor kinase-like Gene Family AT2G37050 67.098 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa5g02918 Malectin_like 2.7e-78 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02918 - - gmx:100784017 1598.18