Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02914 ATGTTGGATCTCAATCTCAACGCTGATTCCGCTTTCAACAACCACACTCTTCCACTCTCCGCCGCGCAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACTGAAGATTCATGCTCGTACGGCGAAGCCTACGCTTACAACTTCGCAATACTCAACAACAACGATACCATCTCCGGTGAGCTTCAACATTCTGGCGCCGGAGAGGCTGGTGTGCGGACAATTCAGCTTTTTCCTGCTAATGAATCGGGAATCTCGCCGTCGGATGGTAGAAACTGGATGAGTTTCTCGTCGGATCATCACGGTGGCGTGCCGGAGCAGATGGTTGTTGCTCCACGGCCACAGCAGGTGAAGAAGAGTCGCCGTGGACCGAGGTCGCGGAGTTCGCAGTATCGCGGCGTTACTTTCTACCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTTTACTTAGGTGGATTTGACACCGCGCATGCTGCAGCAAGAGCTTATGATCGAGCTGCGATCAAGTTTCGTGGTGTTGATGCTGATATTAATTTCAATGTGAGCGATTACGATGAAGATATAAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGCACTGGTTTCTCGAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGCATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGTCTATTCGATAGTGAGCTAGACGCAGCAAGAGCTTATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTTACAAATTTTGAGGCCAGCTCTTACGAAAGAGAGTTAGTTTCCCAGTGTGATAACGAAGATAGCAAGCAGAATCTTGATCTGAACTTGGGTATAGCCCCTCCTGCTAACTCTGATGTTCCAATGATGAACATGCACCAACATGGAAGTGGTTTACAAGTTCAGCGTAGTTGGGATGATATGCCTGTTGATAAGAGTGCTATGTTTGAGGACTCTGGGTCCAGATCAATCAATACTCAGCCACCTTATGGCTTCTCCATAGCTTCTGAGCATCAACCTTCATTTTGGAATGGTACCAATTACTTTCCCATGTGTAAGGAAAGAGCACTAGAGAATACGATGGAAGCTGGTGGTCCCGTTCCAAATTGGGCATGGCAACTCCAAAGTCCTTATAATAACGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATCAGCCACAATACCATCAGCTGCGGATAGTAGTCAACTTCATTTTCCAAACATGGCATACCTCCACCCTCATTTTCCTCCTCCAATGACCAACTCCAGCACCATACCCCCCTTCTACTGCAGGAGCTGA 1422 0.4747 MLDLNLNADSAFNNHTLPLSAAQMESSGSFDSSVVNAADTEDSCSYGEAYAYNFAILNNNDTISGELQHSGAGEAGVRTIQLFPANESGISPSDGRNWMSFSSDHHGGVPEQMVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYERELVSQCDNEDSKQNLDLNLGIAPPANSDVPMMNMHQHGSGLQVQRSWDDMPVDKSAMFEDSGSRSINTQPPYGFSIASEHQPSFWNGTNYFPMCKERALENTMEAGGPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSSATIPSAADSSQLHFPNMAYLHPHFPPPMTNSSTIPPFYCRS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02914 473 CDD AP2 226 286 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 SMART rav1_2 135 197 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 SMART rav1_2 227 290 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 SUPERFAMILY DNA-binding domain 134 193 IPR016177 GO:0003677
Vifa5g02914 473 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 PRINTS Ethylene responsive element binding protein signature 266 286 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 SUPERFAMILY DNA-binding domain 226 285 IPR016177 GO:0003677
Vifa5g02914 473 Pfam AP2 domain 226 276 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 Pfam AP2 domain 135 183 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 ProSiteProfiles AP2/ERF domain profile. 135 191 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 315 - -
Vifa5g02914 473 CDD AP2 135 193 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 ProSiteProfiles AP2/ERF domain profile. 227 284 IPR001471 GO:0003700|GO:0006355
Vifa5g02914 473 FunFam AP2-like ethylene-responsive transcription factor 134 193 - -
Vifa5g02914 473 Gene3D AP2/ERF domain 134 193 IPR036955 GO:0003700|GO:0006355
Vifa5g02914 473 Gene3D AP2/ERF domain 226 285 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02914 Vifa-Chr5 961119050 961121455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02914 114 324 AP2-EREBP Transcription Factor Family AT4G36920 76.415 1.68e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa5g02914 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02914 K09284 - gmx:100797238 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02914 5 961119050 961121455 Vifa5g02914 5 961119050 961121455 ECH