Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02912 ATGCATATGATGCTTGCAATACAGAAAAAGGGAAAAACATGGGAGAAACTTCAACTTGCTGCAAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGATACATTCCTGGAATTTTTACTAATCAGCTCCAAACTTCATTCAGCAAGCCGCGTCGTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAAGTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGGGAAGCATATCATAGGTTGTCTCTTTTGGCTTTTGGCTAGAATGGTGTTGCAGATGCGTGGTACAATTCGCCCTGGTCTTAAATGGGATGTCATGGTGGATCTATTCTTCTATAGAGAACCAGAGGAGGCTAAACAGGAAGAGGAGGATGAAGTTCCTGCTCCAGACTATGCCATTGCTGACTTCAATGCAACAGCTAACCCCATTGATGGTCAGTAG 594 0.4327 MHMMLAIQKKGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRYIPGIFTNQLQTSFSKPRRLILTDPRTDHQPSKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQEEEDEVPAPDYAIADFNATANPIDGQ 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02912 197 NCBIfam 30S ribosomal protein S2 11 165 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa5g02912 197 Gene3D - 4 178 - -
Vifa5g02912 197 SUPERFAMILY Ribosomal protein S2 11 159 IPR023591 -
Vifa5g02912 197 CDD RPS2 12 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02912 197 FunFam 40S ribosomal protein SA 3 179 - -
Vifa5g02912 197 PRINTS Ribosomal protein S2 signature 116 130 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02912 197 PRINTS Ribosomal protein S2 signature 53 70 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02912 197 PRINTS Ribosomal protein S2 signature 78 95 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02912 197 PRINTS Ribosomal protein S2 signature 95 106 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02912 197 Pfam Ribosomal protein S2 75 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02912 197 PANTHER 40S RIBOSOMAL PROTEIN SA 11 186 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02912 Vifa-Chr5 960836874 960838749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02912 11 184 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 82.514 1.13e-109 314