Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02911 ATGGTCATTCAAATTATTCAAAATCACTCAAGTTCAATCATTCGAGCGTCTTTCATTCACTCATATTACAGTATATGTCATTTCGAGATTTCAAAACAAAGTTACAAAGGTCCAAATAAACTTTTACAAAAAACAAAGAAAAAGGGAAAAACGTGGGAGAAACTTCAACTTGCTGCAAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTATTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGATACATTCCTGGAATTTTTACTAATCAGCTCCAAACTTCATTCAGCAAGCCGCGTCGTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAAGTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTTCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGGGAAGCATATCATAGGTTGTCTCTTTTGGCTTTTGGCTAGAATGGTGTTGCAGATGCGTGGTACAATTCGCCCTGGTCTTAAATGGGATGTCATGGTAGATCTATTCTTCTATAGAGAACCAGAGGAGGCTAAACAGGAAGAGGAGGATGAAGTTCCTGCTCCAGACTATGCCATTGCTGACTTTAATGCAGCAGCTAACCCCATTGATGGTCAGTAG 708 0.404 MVIQIIQNHSSSIIRASFIHSYYSICHFEISKQSYKGPNKLLQKTKKKGKTWEKLQLAARVIVAIENPQDIIIQSARPYGQRAVLKFAQYTGAHAIAGRYIPGIFTNQLQTSFSKPRRLILTDPRTDHQPSKEAALGNIPTISFCDTDSPMRYVDIGIPANNKGKHIIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQEEEDEVPAPDYAIADFNAAANPIDGQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02911 235 Pfam Ribosomal protein S2 113 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02911 235 NCBIfam 30S ribosomal protein S2 25 203 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa5g02911 235 SUPERFAMILY Ribosomal protein S2 49 197 IPR023591 -
Vifa5g02911 235 PRINTS Ribosomal protein S2 signature 91 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02911 235 PRINTS Ribosomal protein S2 signature 116 133 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02911 235 PRINTS Ribosomal protein S2 signature 154 168 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02911 235 PRINTS Ribosomal protein S2 signature 133 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02911 235 PANTHER 40S RIBOSOMAL PROTEIN SA 49 225 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa5g02911 235 FunFam 40S ribosomal protein SA 11 217 - -
Vifa5g02911 235 Gene3D - 25 216 - -
Vifa5g02911 235 CDD RPS2 50 181 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g02911 235 Hamap 40S ribosomal protein SA [rps-0]. 4 228 IPR027498 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02911 Vifa-Chr5 960731201 960731908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02911 13 235 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 66.667 2.21e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02911 K02998 - gmx:100805318 337.806