Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02906 ATGATGGATATTGAAGAAGCAGAAAGAGTAGTTGTTGCTAAACCAGTTGCTTCGAGGCCAAATTGTTCGACTTTCAAATCTTTCTCAGAGCTTCTAGCAGGTGCTATCAATGCCACTCCTCCAATTGCTGCTTCTTCTCAAACTACAACTTCTGCAATTAGACCAAAGACAGTCAGGTTCAAGCCACCATTGATTCTCCCCCCTTCTCAGACTGACATATTTAGAGGTGAACTTAGCAATTCTTCTGACATGGATCCTAAACCTGACACCAATCAGTCTCTCATATACAAGCCAATGGCAAAATTCGTGTCACAGACAACTGTCTCGCTCTTGGCAAACATGGGAATTTGTAGTACTAGTAAGTTACAACCACAGCAATCGATGGAGGCCAATCTTCAGAATCTAAACCATGACAAATTTAGATCTAACAAAACCTCAAATTTTCATCAGAACATTACTACCCTACCTACAGAAACACACCAGGCCACTGAACCTTGTAAGACGGCGCAACAGATCATGGAGGAGGACCAAAAAGCTCTAACATCATCCACAGTGAATGCTGATAGACCTTCATATGATGGATATAACTGGAGAAAATACGGACAGAAGCAAGTAAAAGGAAGCGAGTATCCTCGAAGTTATTACAAGTGCACACATCCTAATTGCCCAGTTAAGAAGAAAGTTGAAAGATCATTTGATGGCGAGATTGCTGAAATTGTTTACAAAGGCGAACACAACCATGGAAAACCACAACTTCTAAAGCGCAACGCGGGAGCGACACAAGGATCAGGAATGGTTTCTGATGGAATGGTTCAAGATATATTATTAAGTAATAATAATAATAATCAGAATGAAGGAAGAATAGAGAATCATGTCAAAGCTTCACAGCCTAATGATTCTACTCTTGAAAATTCTTGTGCTTTAAGTGGGGATTGTGAGGAAGGAAGCAAAGGATTCGAGGCAGACGAATATGATCCTAGAAGTAAAAGAAGGAAAAATGAGAATCAATCAAACGAAGCGGCACCATCAGAAGAAGGTTTAGTAGAGCCACGGATTGTGATGCAAAATTCTGCGGATTCTGAAATCCTTGGAGATGGCTTTCGCTGGAGGAAATATGGACAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGTTACTATAGATGTACTCATATAAAGTGCAACGTTCGCAAGCACGTGGAGAGAGCAATTGATGATCCAAAATCATTTGTGACTACATATGAAGGAAAGCACAACCATGAGATACCACTCAAGAACACAACAACTGTGGCATCATCTGAAAAGGATTCTCTTACTAAAGATAAACCATATTGA 1335 0.4037 MMDIEEAERVVVAKPVASRPNCSTFKSFSELLAGAINATPPIAASSQTTTSAIRPKTVRFKPPLILPPSQTDIFRGELSNSSDMDPKPDTNQSLIYKPMAKFVSQTTVSLLANMGICSTSKLQPQQSMEANLQNLNHDKFRSNKTSNFHQNITTLPTETHQATEPCKTAQQIMEEDQKALTSSTVNADRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGEIAEIVYKGEHNHGKPQLLKRNAGATQGSGMVSDGMVQDILLSNNNNNQNEGRIENHVKASQPNDSTLENSCALSGDCEEGSKGFEADEYDPRSKRRKNENQSNEAAPSEEGLVEPRIVMQNSADSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTHIKCNVRKHVERAIDDPKSFVTTYEGKHNHEIPLKNTTTVASSEKDSLTKDKPY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02906 444 SMART WRKY_cls 363 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 SMART WRKY_cls 191 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 SUPERFAMILY WRKY DNA-binding domain 358 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 FunFam WRKY transcription factor 177 251 - -
Vifa5g02906 444 Pfam WRKY DNA -binding domain 365 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 Pfam WRKY DNA -binding domain 193 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 Gene3D WRKY domain 348 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 Gene3D WRKY domain 174 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 127 428 IPR044810 GO:0003700
Vifa5g02906 444 MobiDBLite consensus disorder prediction 315 338 - -
Vifa5g02906 444 ProSiteProfiles WRKY domain profile. 193 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 MobiDBLite consensus disorder prediction 293 307 - -
Vifa5g02906 444 MobiDBLite consensus disorder prediction 293 349 - -
Vifa5g02906 444 SUPERFAMILY WRKY DNA-binding domain 189 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 ProSiteProfiles WRKY domain profile. 358 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g02906 444 FunFam WRKY transcription factor 57 349 423 - -
Vifa5g02906 444 MobiDBLite consensus disorder prediction 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02906 Vifa-Chr5 960637749 960639796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02906 85 424 WRKY Transcription Factor Family AT2G37260 44.595 2.98e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g02906 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02906 - - gmx:100794069 641.343