Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02901 ATGGGTTGGATTCCATGTTCTGGAAATTCAGGAACCAAGAAGAAGATTGTGAAGATGGAAGTTCAAGATAGTGTTGCTCCTCAGATTAAACCTACCCCAGGGAAATTGAAGAGGAATTCATCAACAAATTCCAAGGATAAATCTAAAAACGGGAGCGCACAACACATTGCAGCACAGACTTTCTCGTTTCGCGAGTTGGCATCTGCAACTAGAAATTTTAAAGCAGAATGTCTTTTGGGAGAGGGAGGCTTTGGTAGAGTATACAAAGGGCATATGGAAAGTATCAATCAGGTTGTCGCAATCAAGCAACTTGACCGAAACGGACTCCAAGGGAATCGGGAATTCCTTGTTGAAGTATTGATGTTAAGTCTACTTCACCATCCTAATCTTGTCAATCTTCTTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATTTATGTCATTAGGATCCTTGGAAGACCACTTGCATGATATATCTCTTGGTAAGAAGCGACTTGATTGGAACACGCGAATGAAAATAGCTGCTGGGGCAGCAAAGGGATTGGAATATCTACATGACAAAGCAAATCCTCCGGTTATATACCGAGATTTGAAGTGCTCCAACATCTTGCTTGGTGAAGAGTATCACCCGAAGTTGTCTGATTTTGGTTTGGCGAAACTTGGCCCGGTCGGAGAAAACACCCATGTATCGACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACCGGGCAACTCACTCTCAAATCAGATGTTTATAGTTTTGGTGTAGTTCTTCTAGAAATAATCACGGGAAGGAAAGCAATCGACTATTCAAAATCTGCAGCCGAGCAGAATCTTGTTGCATGGGCTAGACCACTGTTCAAAGATCGAAAGAAATTTTCGCAAATGGCTGATCCTATGCTTCAAGGTCAGTATCCTTCAAGAGGGCTATACCAGGCTCTTGCTGTTGCAGCAATGTGTGTTCAAGAACAAGCTAATATGCGTCCGGTTATAGCTGATGTTGTAACTGCTTTATCTTACCTCGCTTCACAAAGATACAATCACAATACACAGACAGTCCAAAACTCGCACCGCACTCCTCGCACTCCTCCTAGAACCAGAAGGGGACAATGA 1140 0.4281 MGWIPCSGNSGTKKKIVKMEVQDSVAPQIKPTPGKLKRNSSTNSKDKSKNGSAQHIAAQTFSFRELASATRNFKAECLLGEGGFGRVYKGHMESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLLGYCADGDQRLLVYEFMSLGSLEDHLHDISLGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEEYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDYSKSAAEQNLVAWARPLFKDRKKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYNHNTQTVQNSHRTPRTPPRTRRGQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02901 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vifa5g02901 379 SUPERFAMILY Protein kinase-like (PK-like) 59 362 IPR011009 -
Vifa5g02901 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02901 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02901 379 MobiDBLite consensus disorder prediction 357 379 - -
Vifa5g02901 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vifa5g02901 379 FunFam Serine/threonine-protein kinase PBS1 46 149 - -
Vifa5g02901 379 CDD STKc_IRAK 79 347 - -
Vifa5g02901 379 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
Vifa5g02901 379 Pfam Protein tyrosine and serine/threonine kinase 76 346 IPR001245 GO:0004672|GO:0006468
Vifa5g02901 379 MobiDBLite consensus disorder prediction 23 54 - -
Vifa5g02901 379 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Vifa5g02901 379 MobiDBLite consensus disorder prediction 34 54 - -
Vifa5g02901 379 Gene3D Transferase(Phosphotransferase) domain 1 150 371 - -
Vifa5g02901 379 PANTHER OS07G0668900 PROTEIN 35 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02901 Vifa-Chr5 959212001 959214275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02901 33 352 Glycoside Hydrolase AT3G07070 67.188 6.16e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa5g02901 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02901 - - gmx:100499648 656.751