Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02890 ATGCATGCAGTATCTTCCTTACAACCCACGCCTCCTAAACAAGTCTCCCACCACGACATGCTTCCTTTCTTCAACCAATCTATGGAACTCGTTCCCAATCCCCTCAAAACACGAACTCGTCACTCTCCTACACTTGGTGAACTTCTCAAACGCGTAGAAGATGCTCAAAACGACAGCAATAATGCTCAACCCCATCATGTTCTTGACCTTTCTTCCCCCTCTTGTTCCACCACTCTTCCCCCACCTTTTTTCCTTTCTTTCACTAACTTGACTTACAGTGTCAAGCTGAACCAAAAGTTGACTTGCTTTTCTTCCAATCAAAATTCTCTTCCAATTGATCAGGAAACCGAAACTAAACCAAATGGCACCAAGATTCTCCTTAACAACATCTCCGGTGAAGCGAGAGACGGTGAAATCATGGCAGTTCTTGGTGCAAGCGGCTCTGGCAAGTCAACTCTCATAGACGCTCTCGCAGACAGAATTTCCAAAGAATCTCTCAAAGGTACTGTAACTCTAAACGGCGATGTTTTAGAGTCAAGCCTCCAGAAGGTAATTTCAGCTTATGTCATGCAAGACGACCTTCTCTTCCCTATGCTCACCGTGGAAGAAACTCTTATGTTCTCGGCGGAGTTTAGACTCCCTCGCTCTCTCTCCAAATCAAAGAAAAAAGCTCGTGTCCAAGCACTCATCGACCAGCTCGGTCTCCGCAACGCCGCCTCGACCGTCATAGGAGACGAAGGTCACCGTGGTGTCTCAGGTGGAGAACGTCGCCGTGTCTCAATCGGTACAGACATTATCCACGATCCAATCATTTTATTCTTAGACGAACCAACCTCCGGTCTTGACTCCACCAGCGCATACATGGTGGTTAAGGTCTTGCAGCGAATTGCTCAAAGCGGGAGCATAGTCATGATGTCAGTTCATCAACCAAGCTACAGAATCCTCGGACTGTTAGACCGTTTGATCTTCCTCTCCCACGGTCAAACCGTCTACAGCGGTTCTCCGGCGAGCATCCCTAGTTTTTTCTCCCAGTTCGGTCATCCTATACCGGAAAACGAAAACCGAACGGAATTTGCACTGGACCTAATCCGCGAGCTTGAAGAAACACAAGGAGGAACCAAAGGTCTTGTGGAGTTCAACAAAACATGGCAGTTGAAAAATCAACCACTTTCAGCAAAAGTCTTTAACAACGGAGCCAAACTGTCGTTAAAAGACGCCATCAGCGCGAGCATCTCAAGAGGGAAACTAGTCTCAGGAACTAACAGCGGAAACGGAAAATCAACCGCTTCAGTTGCAACGTTTGCTAATCCGTTCTGGATTGAAATGGCGGTTATCGGAAAACGCTCTCTAACAAACTCACGGAGGATGCCGGAACTATTCGGAATCCGCTTGGGTGCAGTTCTGGTCACCGGAGGAATCTTAGCCACCATCTTTTACCATCTTGACGATTCACCAAAAGGTGTTCAAGAGCGTTTAGGTTTCTTCGCCTTCGCCATGTCAACAACCTTCTACACCTGCGCAGAAGCCATTCCCGTTTTCCTCCAAGAGCGTTACATTTTCATGAGAGAAACTGCCTACAACGCTTACCGTCGTTCCTCTTACGTCCTTGCTCATTCCATCATCTCCCTCCCTGCACTAGTCTTCCTCTCCTTCACCTTCGCCGTCACAACTTTCTGGTCAGTCGGACTCGCCGGTGGAACATCTGGTTTTCTGTTCTACTTTTTAACAATATTAGCTTCTTTCTGGGCAGGGAGTTCCTTCGTCACGTTCCTCTCCGGCGTAGTCTCCCATGTGATGCTTGGTTTCACGGTGGTGGTTGCGATAATGGCCTACTTTCTTCTCTTCAGTGGATTCTTCATCAGCAGAGACAGAATTCCACCTTACTGGATATGGTTCCATTACCTGTCACTGGTGAAGTACCCTTTTGAAGGAGTGCTTCAGAATGAGTTTGATATTAACCCACCAAGATGCTTTGTGAGAGGAATTCAGATGTTCGATAACACGCCACTCGGGGATGTGCCCGGGAGTTTGAAGGTGGAGCTGCTGAAGAGCATGAGCAGGACGCTTGGGATTAACATAACGAGCGACACTTGTGTTGTTACAGGAGAAGATGTACTGAAGCAGCAGGGGGTCACACAGCTTAGTAAATGGAATTGCCTGTTCATCACCATTGCTTGGGGTTTCTTCTTTCGGTTCCTCTTTTACTTGGCGTTGCTTTTTGGAAGCAAGAACAAAAGGAAATAA 2244 0.4733 MHAVSSLQPTPPKQVSHHDMLPFFNQSMELVPNPLKTRTRHSPTLGELLKRVEDAQNDSNNAQPHHVLDLSSPSCSTTLPPPFFLSFTNLTYSVKLNQKLTCFSSNQNSLPIDQETETKPNGTKILLNNISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGTVTLNGDVLESSLQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRNAASTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVMMSVHQPSYRILGLLDRLIFLSHGQTVYSGSPASIPSFFSQFGHPIPENENRTEFALDLIRELEETQGGTKGLVEFNKTWQLKNQPLSAKVFNNGAKLSLKDAISASISRGKLVSGTNSGNGKSTASVATFANPFWIEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGGILATIFYHLDDSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISLPALVFLSFTFAVTTFWSVGLAGGTSGFLFYFLTILASFWAGSSFVTFLSGVVSHVMLGFTVVVAIMAYFLLFSGFFISRDRIPPYWIWFHYLSLVKYPFEGVLQNEFDINPPRCFVRGIQMFDNTPLGDVPGSLKVELLKSMSRTLGINITSDTCVVTGEDVLKQQGVTQLSKWNCLFITIAWGFFFRFLFYLALLFGSKNKRK 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02890 747 FunFam ABC transporter G family member 6 116 342 - -
Vifa5g02890 747 Pfam ABC-2 type transporter 444 650 IPR013525 GO:0016020|GO:0140359
Vifa5g02890 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 345 IPR027417 -
Vifa5g02890 747 Pfam ABC transporter 127 279 IPR003439 GO:0005524
Vifa5g02890 747 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 54 735 - -
Vifa5g02890 747 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 112 351 IPR003439 GO:0005524
Vifa5g02890 747 ProSitePatterns ABC transporters family signature. 251 265 IPR017871 GO:0005524|GO:0016887
Vifa5g02890 747 Pfam ABC-2 type transporter 308 388 IPR043926 GO:0140359
Vifa5g02890 747 Gene3D - 115 342 IPR027417 -
Vifa5g02890 747 SMART AAA_5 136 351 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02890 Vifa-Chr5 956521143 956523386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02890 126 311 Calmodulin-binding Proteins AT2G36910 29.101 2.96e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02890 K05681 - gmx:100781319 1149.04