Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02875 ATGACTATATCGTGCTGGAAACCAAGTGTGGAGCGTGATGATGAAGATGTGAAAGGGAAAGTTGATGGATTGTTATGGTATAAGGATTTGGGGAATCATCTTTATGGTGAATTTTCAATGGCTGTAATTCAAGCTAATAGTTCTTTGGAGGATCATAGTCAGCTTGAATCTGGACCGTTGAGTTCGGATTATCTGGGTCCTCAAGGAACTTTTGTAGGTGTTTATGATGGTCATGGTGGACCTGCAGCATCTAAGTTTGTCAATGACAATCTATTCTCCAATTTCAAGAGTTTTGCAGCAGAAGAACAAGGCGTTTCGGAAAAGGTTATAAAGAGGGCATTTTCTGCAACAGAAGATGATTTTCTGTCTCTTGTGAAGAAGCAGTGGCTAACAAAACCACAGGTAGCGTCTTCCGGTACATGTTGTTTGGCCGGGATAATTTGCAATGGCATGCTGTATGTTGCAAATGCAGGAGATTCAAGAGCCGTGTTAGGAAGAGTGAAGAAGGGAACAAAGGAAACATTAGCTGTTCAGTTATCTGCAGAACACAATGTTAACATAGAGACTGAGAGAAACGATGTTCGGTCGAAACATCCTTATGATCCACAGATTGTGATTATGAAACACTCCGTTTGGCGCGTGAAAGGCATCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCCGAATTTAACACCGAGCCTCTGCCACAAAAGTTTAGACTTCCCGAAACTTTTTTCAAGCCGATTCTTAGTAGCGAACCATCGGTAATGATTCATAAAATCCAACCCGAAGATCAATTCCTCATCTTTGCTTCTGATGGTTTATGGGAGCAACTTAGCAACCAAACAGCTGTCAATATAGTTAGCAACAATCCACGCAATGGAATAGCTAGGAGACTCGTGAAAGCAGCGCTTAAAGAAGCAGCTAAGAAAAGAGAGATAAGATTGTCAGATCTCCAAAAGATTGAACAAGGAGTGAGGAGACATTTTCATGACGATATTACAGTAATCGTTGTATATCTAAACCGTAAACTGATCGATAATAGCTCTCTATGTAGTTCTCCTCTTTCAATCAAAGGTGGTAGGCATGTCAATTTTTAG 1113 0.4061 MTISCWKPSVERDDEDVKGKVDGLLWYKDLGNHLYGEFSMAVIQANSSLEDHSQLESGPLSSDYLGPQGTFVGVYDGHGGPAASKFVNDNLFSNFKSFAAEEQGVSEKVIKRAFSATEDDFLSLVKKQWLTKPQVASSGTCCLAGIICNGMLYVANAGDSRAVLGRVKKGTKETLAVQLSAEHNVNIETERNDVRSKHPYDPQIVIMKHSVWRVKGIIQVSRSIGDAYLKKAEFNTEPLPQKFRLPETFFKPILSSEPSVMIHKIQPEDQFLIFASDGLWEQLSNQTAVNIVSNNPRNGIARRLVKAALKEAAKKREIRLSDLQKIEQGVRRHFHDDITVIVVYLNRKLIDNSSLCSSPLSIKGGRHVNF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02875 370 Gene3D - 27 354 IPR036457 -
Vifa5g02875 370 FunFam Phosphatase 2C family protein 26 355 - -
Vifa5g02875 370 CDD PP2Cc 35 345 IPR001932 -
Vifa5g02875 370 PANTHER PROTEIN PHOSPHATASE 25 344 IPR015655 GO:0004722|GO:0006470
Vifa5g02875 370 SUPERFAMILY PP2C-like 65 346 IPR036457 -
Vifa5g02875 370 SMART PP2C_4 31 343 IPR001932 -
Vifa5g02875 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vifa5g02875 370 Pfam Protein phosphatase 2C 68 314 IPR001932 -
Vifa5g02875 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02875 Vifa-Chr5 953283178 953284628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02875 1 365 PP2C-type Phosphatase Gene Family AT3G12620 66.576 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02875 K01102 - gmx:100815902 582.793