Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02870 ATGATAAGCGCTCTAGACTTATACCATGTCCTCACAGCTGTAGTTCCACTCTATGTAGCAATGATCCTCGCCTACGGTTCAGTAAAATGGTGGAAAATCTTCACACCTGACCAATGTTCAGGCATAAACCATCTGGAAGCTACGGCTATGTCGTTCATTGGCACTCAGCTCAAGTGTAAGGCTCGTAAGAAAACGGTTTATCTTGTTGATCAGCTTTCGGCTGATGGTACTTCTTACCATAAAGCTTGCTTCAGATGCACTCACTGCAGAGGAACTTTAAAGCTGAGCAACTATTCTTCAATGGAAGGTGTTCTTTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGCACGGCAACTTCAGCAAGAATTTTTAG 378 0.4312 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINHLEATAMSFIGTQLKCKARKKTVYLVDQLSADGTSYHKACFRCTHCRGTLKLSNYSSMEGVLYCKPHFEQLFKEHGNFSKNF 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02870 125 Gene3D Cysteine Rich Protein 54 123 - -
Vifa5g02870 125 SMART lim_4 58 110 IPR001781 -
Vifa5g02870 125 FunFam LIM domain and actin-binding 1 53 123 - -
Vifa5g02870 125 CDD LIM1_SF3 55 117 - -
Vifa5g02870 125 ProSiteProfiles LIM domain profile. 57 117 IPR001781 -
Vifa5g02870 125 PANTHER OS06G0237300 PROTEIN 54 125 - -
Vifa5g02870 125 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 52 84 - -
Vifa5g02870 125 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 85 124 - -
Vifa5g02870 125 Pfam Membrane transport protein 9 45 IPR004776 GO:0016020|GO:0055085
Vifa5g02870 125 Pfam LIM domain 63 114 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02870 Vifa-Chr5 952235754 952236240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02870 1 47 Organic Solute Cotransporters AT1G73590 82.979 3.27e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa5g02870 LIM 3.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02870 K09377 - gmx:100786139 146.362