Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02867 ATGAAAATACCAAAAGAAACTCAAAAGAAAGATGATAGTGATGCTTACAACGACTGGTGTCACGGTGAAGATTGTTGGCTGGAGCAGGAAGCCAGGATGGAGCTAGTTGTATGTTGTGACGAAAGAAGCACGGAGGGAGGGCCTCCTATGTATAGGTTATGGAGAAAGCTGAAAAGGCTTAAGATTTTCCTCAGAACTTTGAATAGAAGAATCACCTCTGAGGTGAAGAAGATTCAGGATTATAGGAGCCAGCTTGAGGTTGCTCAGGAAAATCTTAATAAAAATATGTTTAACTCTGACTGTATGCAGGATGTGAAGAAGATAGCAGATAAGCTTATGCATGCTACAATTGAAGAGGAAAAGCTTCTTATGCAAAGATCAAAAGTTGACTGGATCAAATTGGGAGATTCTAATAATGCATACTTCCATGCAATTGTTAGAGGAAAAAACAAGATGAATGGGATTCATATGTTGGAAGATACAAATGGGCATAGCATTACTGACCCCCAATCAATGCAACTTGAAGTTCTGAGTTTCTATAAAGGTCTGATTGGCATCTCTTTATCTGTCCTAAAGCATGTTAATATTGACATTTTGAGGAAAGAGAAGCAGATCAAAAAGAGCAATAATCAGGATCTCATTAGGCCTATTACAGAAAAAGAGGTTCAGGAGGCGATCAATAGTGCTCGCTCAATGGATAAATTACTGATTTCATTCAAGCCCGTAGGGGCCTTCGCCAGGGGATCCCATATCCCCATTACTGTTTGTGTTGGTGATGGACTATCTGCAGCGATAGGTGAAAAAGGCTACGTGCATTTACTTATGGAAGTTTTTCAGGATTTCTCCCTTGCGAATGGTCTGAAAGCGCATCCTGCCAAGTTGTATTGGATGCAGATTATCCCATTACCGCATAAAGTTATTAATGAGATTGAGGCAACTTGTCGAAGCTACTTGTGGAGTGGTAAGGAAATTATTTCTAGAAAAGATCCTATTGCTTGGGATAAAATTTGTAGTCCCAAAGCAGTTGGAGGTAAGTTTAAAAATGGCCTGATGTATAGAGCTTTAGAGGAAGACTTTGTGCAGGTTGATTGGAAAGACATCCCGGTGAAGAATCGTGTGAGGCCCAGAGCGCTTTTCACCTTGTGGTTGTGCTTATGGAAGAAACTTCTTACGAAAGACAGGCTAATCAAGTTCGGGCTTAATATTGATGGCACCTGTTTCTTCTGTGATGAGTTTGAAACAATAGATCATTTGTTCTTTGTTTGTGCTAATATGGCTAACCATGAAGAGGCAAAGTCTCACCCTAAGCTCAATGAACGAATACTTTCTTCGATGTCGAGGAGAACTGTTGCTGCTCACCCTTGGCATGATGTAGAGATAGGACCGGGCGCTCCAGTAGTTTTCAATTGTGTGATTGAAATTGGCAAAGGCGGTAAGGTTAAGTATGAGCTGGACAAGAAAAGTGGACTTATAAAGGTTGATCGTGTTCTTTACTCATCAGTTGTCTACCCACACAACTACGGTTTCATCCCACGAACCCTTTGTGAAGACAGTGATCCTATGGATGTTCTGGTTCTGATGCAGGAACCTGTGCTACCTGGTACCTTCCTCCGTGCTCGTGCTATTGGACTAATGCCCATGATTGACCAGGATCTTCATGGGAGCAATGTTTTGTACGGGTATCGAATAGATGGATCTCAAGACTGGGGTAAGGGGCATCGCTTGCCTTTTGACTGGGGAGAGAATTATAAGCTTCCAAATATTGCCGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATGGATGAATCTAGTGGATTGGATAACAACATTCGTGGAAGCTATCTTGGTGTGATTGAGAAGATCCCACATCTTCTAGAGCTTGGTATCAATGCAGTGGAGTTGCTGCCTATCTTTGAGTTTGATGAGTTGGAATTGCAAAGGCATCCGAATCCTAGAGATCACATGAGCCTTTTCATATGGGACACACATTCCACACAAGAGAAGAAAGAGAAAAGAAGGAAATGGATATTTGGAAAGCTAAAAACCAAGAAGTTACCTTCAATTACAGCTCCAGCAACAACATCAAATGAAGCTGAGGAAGAGGGAAAAACCAAGCATTCTCAAGTTGTTATGCTTAATGAAGTTTCACAATCTGGTTATCAAAAAGATCAAGATGGCTCAGAAGAATCTGAACCTGTTAAAACTAGGAATGGTGTTCCTCGATCAATATATCTGTGCCAGAGAGAGATTCAAGAATTTTCAGCCATCAAAATTCAAACTGCTTTTAGGGGCTACCTTGAAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTAAAACTTCAAGCGATTATTCGTGGGCGAGCAGTGAGACGCCAAGCTATGAGTACTCTCAAGAGCTTGCAGTCCATTGTAAGTATTCAATCAAAGATATGTGCAAGGAGACTCCAAATGGTTGAAGGAAGATGGGATTCTGTTGAAGATGAAGAGACTCTTTATTCTAAAGACAAGATCATTAGGATGGACTCAAACAGCGAAAGAAAGTGGGATGACAACACTTTATTGAAGGAAGAGGTAGATGCCTGTTGCATGATCAAGAAAGAAGGCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAACGGAAGATGGAGATGA 2712 0.4071 MKIPKETQKKDDSDAYNDWCHGEDCWLEQEARMELVVCCDERSTEGGPPMYRLWRKLKRLKIFLRTLNRRITSEVKKIQDYRSQLEVAQENLNKNMFNSDCMQDVKKIADKLMHATIEEEKLLMQRSKVDWIKLGDSNNAYFHAIVRGKNKMNGIHMLEDTNGHSITDPQSMQLEVLSFYKGLIGISLSVLKHVNIDILRKEKQIKKSNNQDLIRPITEKEVQEAINSARSMDKLLISFKPVGAFARGSHIPITVCVGDGLSAAIGEKGYVHLLMEVFQDFSLANGLKAHPAKLYWMQIIPLPHKVINEIEATCRSYLWSGKEIISRKDPIAWDKICSPKAVGGKFKNGLMYRALEEDFVQVDWKDIPVKNRVRPRALFTLWLCLWKKLLTKDRLIKFGLNIDGTCFFCDEFETIDHLFFVCANMANHEEAKSHPKLNERILSSMSRRTVAAHPWHDVEIGPGAPVVFNCVIEIGKGGKVKYELDKKSGLIKVDRVLYSSVVYPHNYGFIPRTLCEDSDPMDVLVLMQEPVLPGTFLRARAIGLMPMIDQDLHGSNVLYGYRIDGSQDWGKGHRLPFDWGENYKLPNIAEKDLVIYEMNVRAFTMDESSGLDNNIRGSYLGVIEKIPHLLELGINAVELLPIFEFDELELQRHPNPRDHMSLFIWDTHSTQEKKEKRRKWIFGKLKTKKLPSITAPATTSNEAEEEGKTKHSQVVMLNEVSQSGYQKDQDGSEESEPVKTRNGVPRSIYLCQREIQEFSAIKIQTAFRGYLEKKALRALKGIVKLQAIIRGRAVRRQAMSTLKSLQSIVSIQSKICARRLQMVEGRWDSVEDEETLYSKDKIIRMDSNSERKWDDNTLLKEEVDACCMIKKEGIIKRERIKEYTFNHRRSAESERSKVNGRWR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02867 903 Coils Coil 64 91 - -
Vifa5g02867 903 ProSitePatterns Inorganic pyrophosphatase signature. 517 523 - -
Vifa5g02867 903 Pfam zinc-binding in reverse transcriptase 351 423 IPR026960 -
Vifa5g02867 903 Pfam Inorganic pyrophosphatase 470 551 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vifa5g02867 903 Gene3D Glycosidases 574 676 - -
Vifa5g02867 903 CDD pyrophosphatase 467 550 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vifa5g02867 903 MobiDBLite consensus disorder prediction 693 713 - -
Vifa5g02867 903 Gene3D Inorganic pyrophosphatase 449 558 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vifa5g02867 903 ProSiteProfiles IQ motif profile. 780 807 IPR000048 GO:0005515
Vifa5g02867 903 PANTHER INORGANIC PYROPHOSPHATASE 426 551 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vifa5g02867 903 SUPERFAMILY (Trans)glycosidases 576 647 IPR017853 -
Vifa5g02867 903 Gene3D - 754 807 - -
Vifa5g02867 903 ProSiteProfiles IQ motif profile. 756 784 IPR000048 GO:0005515
Vifa5g02867 903 SUPERFAMILY Inorganic pyrophosphatase 447 551 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02867 Vifa-Chr5 951773476 951785144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02867 662 903 IQD Protein Family AT5G13460 48.790 6.75e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02867 - - gmx:100800192 329.331