Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02862 ATGGCAATGAAGAGACAAAGGAACAACGAAGGAACAACAGACAACATAGATTTAGCAAACTGCTTAATGCTACTCTCTTGTCCACAACAACAAAAAGCCTTTGAAAACGGAGTTTACGAGTGCAAAACATGCAACAAAAGATTCTCATCTTTTCAAGCACTCGGTGGCCATAGAGCTAGTCACAAGAGAATGAAGCTAGCTGAAGGGGAAGAGCTTAAAGAACAAGCCAAGTCTCTTAGTTTATGGAACAAACCAAAAATGCATGAGTGTTCTATTTGCGGTATGGGATTTTCTTTGGGTCAAGCATTGGGAGGACACATGAGAAAACATAGAGCTCTTATGAGTGAAGGGTTTTCTTCTATCAATGAAATCATTGCGAAGATTCCAGTTTTGAAGAGATCGAATAGTAAGAGAGTTATGGGATTTGACTTGAATTTGACGCCTCTGGAGAATGATGACTTGATGTTTGGAATGAAGTCACCTTTAACATCAATTCCACTTTCTTTGTTTTGA 513 0.3879 MAMKRQRNNEGTTDNIDLANCLMLLSCPQQQKAFENGVYECKTCNKRFSSFQALGGHRASHKRMKLAEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRALMSEGFSSINEIIAKIPVLKRSNSKRVMGFDLNLTPLENDDLMFGMKSPLTSIPLSLF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02862 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vifa5g02862 170 SUPERFAMILY beta-beta-alpha zinc fingers 38 110 IPR036236 -
Vifa5g02862 170 Gene3D Classic Zinc Finger 36 110 - -
Vifa5g02862 170 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vifa5g02862 170 PANTHER ZINC FINGER PROTEIN ZAT5 3 152 - -
Vifa5g02862 170 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vifa5g02862 170 Pfam C2H2-type zinc finger 38 62 - -
Vifa5g02862 170 Pfam C2H2-type zinc finger 88 112 - -
Vifa5g02862 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vifa5g02862 170 SMART c2h2final6 88 110 IPR013087 -
Vifa5g02862 170 SMART c2h2final6 39 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02862 Vifa-Chr5 949277319 949277831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02862 3 157 C2H2 Transcription Factor Family AT2G37430 48.810 2.18e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g02862 zf-C2H2_6 1.4e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02862 - - aprc:113870747 218.779