Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02859 ATGAATAAACCACAGCAAAAAAGTTTTGGAGCAGTAGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCCTTTCAAGCACTAGGTGGGCACAGTGCAAGCCATAAAAGATCAAAACTAGAAGATGGTGAGTTCATGAAAACAAACGCAACACCTAAAATGCATGAATGTTCCATTTGTGGACAAGTGTTTTCGTTGGGTCAAGCACTAGGTGGACACATGAGAAGGCATAAAGCTATGATCAACCCAGAGTTTTCTTCAATAGAAAAAGTTGTTGTGAAGTTACCAGTTTTAAAGAGATTGAATAGTGCTAGGGTCATGTGCTTGGACTTGAATTTGACACCTTTGGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTACGAAGCTTGATGTTTTAGTTTGA 411 0.3747 MNKPQQKSFGAVEYECKTCNKKFSSFQALGGHSASHKRSKLEDGEFMKTNATPKMHECSICGQVFSLGQALGGHMRRHKAMINPEFSSIEKVVVKLPVLKRLNSARVMCLDLNLTPLENDLKLLFGKMATKLDVLV 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02859 136 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Vifa5g02859 136 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Vifa5g02859 136 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Vifa5g02859 136 PANTHER ZINC FINGER PROTEIN ZAT5 12 120 - -
Vifa5g02859 136 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 41 IPR013087 -
Vifa5g02859 136 SMART c2h2final6 14 36 IPR013087 -
Vifa5g02859 136 SMART c2h2final6 56 78 IPR013087 -
Vifa5g02859 136 Gene3D Classic Zinc Finger 11 78 - -
Vifa5g02859 136 SUPERFAMILY beta-beta-alpha zinc fingers 14 78 IPR036236 -
Vifa5g02859 136 Pfam C2H2-type zinc finger 56 80 - -
Vifa5g02859 136 Pfam C2H2-type zinc finger 14 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02859 Vifa-Chr5 948793905 948794315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02859 7 134 C2H2 Transcription Factor Family AT2G37430 51.852 6.81e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g02859 zf-C2H2_6 1.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02859 - - gmx:100527151 181.03