Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02858 ATGAAGAGACAAAGAGATGTTGAAGGTTTAGAAAACATAAATTTAGCAAATTGTTTAATGATGCTTTCTTTTCCTCAACAACAACAAATGAATAAACCACAGCAAAAAAGTTTTGGAGCAGTGGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCCTTTCAAGCACTAGGTGGGCACAGTGCAAGCCATAAAAGATCAAAACTAGAAGGTGGTGAGTTCATGAAAACAAACGCAACACCTAAAATGCATGAATGTTCCATTTGTGGACAAGTGTTTTCTCTGGGGCAAGCACTAGGTGGACACATGAGAAGGCATAAAGCTATGATCGACGTTCAAGAGTTTTCTTCAATAGAAAAGGTTGTGAAGTTACCAGTTCTGAAGAGATTGAGTAGTTCTAGAGTTATGTGCTTGGACTTGAACTTGACACCGTTGGAGAATGATTTGAAGTTATTGTTTGGAAAAATGGCTCCCAATCTTGATGTTTTGGTCTGA 498 0.3735 MKRQRDVEGLENINLANCLMMLSFPQQQQMNKPQQKSFGAVEYECKTCNKKFSSFQALGGHSASHKRSKLEGGEFMKTNATPKMHECSICGQVFSLGQALGGHMRRHKAMIDVQEFSSIEKVVKLPVLKRLSSSRVMCLDLNLTPLENDLKLLFGKMAPNLDVLV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02858 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Vifa5g02858 165 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vifa5g02858 165 Pfam C2H2-type zinc finger 43 67 - -
Vifa5g02858 165 Pfam C2H2-type zinc finger 85 109 - -
Vifa5g02858 165 Gene3D Classic Zinc Finger 40 107 - -
Vifa5g02858 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vifa5g02858 165 SMART c2h2final6 43 65 IPR013087 -
Vifa5g02858 165 SMART c2h2final6 85 107 IPR013087 -
Vifa5g02858 165 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Vifa5g02858 165 PANTHER ZINC FINGER PROTEIN ZAT5 11 149 - -
Vifa5g02858 165 SUPERFAMILY beta-beta-alpha zinc fingers 43 107 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02858 Vifa-Chr5 948577361 948577858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02858 1 163 C2H2 Transcription Factor Family AT2G37430 49.143 2.24e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g02858 zf-C2H2_6 1.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02858 - - gmx:100527151 219.935