Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02856 ATGATGGAATGTTGTAACCAAAAAAGGTTTGACAGAATGAAACCATTCTTAGCTGTAGTGTTTTTGCAATTTGGATATGCTGGTATGGATGTTTTATCTAAAGCTGCACTGAACAAAGGAATGAGTAATTATGTACTCGTCGTTTATCGTCACATCGCAGCCTTCGTTGTGATCGCTCCTTTTGCATTGATCTTGGAAAAGAAAGTTAGGCCAAAGATGACATTTTCAATCTTTATGAAGCTTGTGGCTCTCAGTACGCTAGAACCGGTAATCGATCAGAATTTATATTTCTTGGGAATGAAGTATACAACAGCTACTTTCGCAGTCGCTATGTACAATGTCCTCCCTGCCATTACCTTCGTCATGGCTTATATTTTCAAACTTGAGAAGATAAAAATGAAAAGTGTGCATAGTCAAGCAAAGGTGGTTGGGACATTAGCAACAGTTGCAGGTGCTATGGTTATGACATTGTTTAGAGGTCCAATACTTAATATTTTTGGGACACATGGAAATAGTGCTCAAATCCAACATAATAGTGGTGCAAATCTTCAACATGCAATAAAGGGATCAATTATGATAACAGTTGGTTGTTTTAGTTGTGCTTGTTTCATGATTTTACAAACGATCACACTTGAAACATATCCTGCTGAGCTGTCACTTACAGCATGGATATGTTTATTGGGAACAATTGAAGGTGGCATCGTAGCTTTGATTATGGAAAGGGGTGATTATTCTGTTTGGTCTTTGAATTGGGATACAAAACTTTTGGCTGCGGTTTATAGTGGTATAGTTTGTTCAGGATTGGCCTATTACATCCAAGGAGTTGTTATGAGATATAGAGGTCCAGTTTATGTAACAACTTTCAATCCTCTCTGTATGGTCATTGTAGCTATCACGAGCTCAATTTTTTTGGCCGAGAAAATATATCTCGGAAGGGTTGTCGGTGCGGTTGTGATAATTATAGGATTGTATTTAGTGGTGTGGGGTAAAAGCAAAGATTATGACACACCAAGTTCAATTATTAAAGATGAAGCATTACCAGTTATGGAAAGTAGAGAGAGCAATGACAAAGATGAGAATCCTAATCCTAATGATAAAGTCATCACTAAGAGTAACTTTGTTGCAATAATTCGAGATGAACAAGTGTGA 1149 0.3725 MMECCNQKRFDRMKPFLAVVFLQFGYAGMDVLSKAALNKGMSNYVLVVYRHIAAFVVIAPFALILEKKVRPKMTFSIFMKLVALSTLEPVIDQNLYFLGMKYTTATFAVAMYNVLPAITFVMAYIFKLEKIKMKSVHSQAKVVGTLATVAGAMVMTLFRGPILNIFGTHGNSAQIQHNSGANLQHAIKGSIMITVGCFSCACFMILQTITLETYPAELSLTAWICLLGTIEGGIVALIMERGDYSVWSLNWDTKLLAAVYSGIVCSGLAYYIQGVVMRYRGPVYVTTFNPLCMVIVAITSSIFLAEKIYLGRVVGAVVIIIGLYLVVWGKSKDYDTPSSIIKDEALPVMESRESNDKDENPNPNDKVITKSNFVAIIRDEQV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02856 382 PANTHER WAT1-RELATED PROTEIN 14 334 IPR030184 GO:0016020|GO:0022857
Vifa5g02856 382 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020
Vifa5g02856 382 Pfam EamA-like transporter family 17 155 IPR000620 GO:0016020
Vifa5g02856 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 159 - -
Vifa5g02856 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02856 Vifa-Chr5 946561805 946563832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02856 1 372 Nodulin-like Gene Family AT2G37460 63.200 2.77e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02856 - - gmx:100777050 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02856 5 946561805 946563832 Vifa5g02856 5 946561805 946563832 ECH