Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02855 ATGGAATGGTGCAACCAAAAAAAGTTTGACAGAATGAAACCATTCATAGCTGTCGTGTTCATGCAATTTGGATATGCTGGTATGGATGTTTTATCTAAAGCTGCACTGAACAAAGGAATGAGTAATTATGTACTCGTCGTTTATCGTCACGCTGTCGCCTTTGTTGTGATGGCTCCTTTTGCACTGTTCTTGGAAAAGAAAGTTAGGCCAAAGATGACATTTTCAATCTTTATGAAGCTTGTGGCTCTCAGTACACTAGAACCGGTAATCGATCAGAATTTATATATCTCGGGAATGAAGTATACAACGGCTACTTTCGCAGTCGCTATGAACAATGCCCTCCCTGCCATAACCTTTGTCATGGCTTGTATTTTCAAACTTGAGAAGATAAAAATGAAAAGTGTGCATAGTCAAGCAAAGGTGGTTGGGACATTAGCAACAGTTGCAGGTGCTATGGTTATGACATTGTTAAGAGGTCCAATACTTAATATTTTTGGGACACATGGAAATAGTGCTCAAATCCAACATAATGGAACCAATCTTCAACATGCAATAAAGGGATCAATTATGATCACAATTGGTTGTTTTAGTTGTGCTTGTTTCATGATTCTCCAAACAATTACACTTGAAACATATCCTGCTGAGCTGTCACTTACAGCATGGATATGTTTATTGGGAACAATTGAAGGTGGCATCGTAGCTTTGATTATGGAAAGGGGTGATTATTCTGTTTGGTCTTTGAATTGGGATACAAAACTTTTGGCTGCGGTTTATAGTGGTATAGTTTGTTCAGGAATGGCCTATTATATACAAGGAGCAGTTATGAGACATAGAGGTCCAGTTTTTGTAACAACTTTCATTCCTCTCGGTATGGTCATTGTAGCGATTATGAGCCCTTTCTTTTTGGCCGAGAAAATATACCTCGGAAGGGTGATCGGCGCAGTTGTGATTATTATAGGATTGTATTTAGTGGTATGGGGTAAAAGCAAAGATTATGACACTCCAAATTCAATTGTTAAAAATGAAGCATTAGCAGTTAAGGAAAGTACAGAGAAGAATGACAAAATGGAGAATCCTAATCATGAGATCATCACTAGCAGCAATTTTGTTGCAAAAGAGCGAGATGAACAAGTGTGA 1137 0.3817 MEWCNQKKFDRMKPFIAVVFMQFGYAGMDVLSKAALNKGMSNYVLVVYRHAVAFVVMAPFALFLEKKVRPKMTFSIFMKLVALSTLEPVIDQNLYISGMKYTTATFAVAMNNALPAITFVMACIFKLEKIKMKSVHSQAKVVGTLATVAGAMVMTLLRGPILNIFGTHGNSAQIQHNGTNLQHAIKGSIMITIGCFSCACFMILQTITLETYPAELSLTAWICLLGTIEGGIVALIMERGDYSVWSLNWDTKLLAAVYSGIVCSGMAYYIQGAVMRHRGPVFVTTFIPLGMVIVAIMSPFFLAEKIYLGRVIGAVVIIIGLYLVVWGKSKDYDTPNSIVKNEALAVKESTEKNDKMENPNHEIITSSNFVAKERDEQV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02855 378 Pfam EamA-like transporter family 16 154 IPR000620 GO:0016020
Vifa5g02855 378 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020
Vifa5g02855 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Vifa5g02855 378 MobiDBLite consensus disorder prediction 349 378 - -
Vifa5g02855 378 PANTHER WAT1-RELATED PROTEIN 13 332 IPR030184 GO:0016020|GO:0022857
Vifa5g02855 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02855 Vifa-Chr5 946382955 946384835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02855 10 374 Nodulin-like Gene Family AT2G37460 63.043 2.26e-166 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02855 - - gmx:100806461 550.436