Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02853 ATGGAATGTTGTAACCAGAAAATGTTTGACAGAATGAAACCATTCATAGCTGTAGTGTTCTTGCAATTTGGATATGCTGGTATGGATGTTTTATCCAAAGCTGCACTGAACAAAGGAATGAGTAACTATGTACTCGTCGTTTATCGTCACGCCGTCGCCTTCGTTGTGATTGCTCCTTTTGCACTGATCTTGGAAAAGAAAGTTAGGCCAAAGATGACATTTTCAATCTTTTTGAAGCTAGTGGCTCTCAGTACACTAGAGCCGATAATCGATCAGAATTTATATTTCTTGGGAATGAAGTATACAACGGCTACTTTCGCTGTCGCTATGAACAATGTCCTCCCTGCCATAACCTTTGTCATGGCTTGTATTTTCAAACTAGAGAAGATAAAAATGAAAAGTGTGTATAGTCAAGCAAAGGTGGTTGGGACATTAGCAACAGTTGCAGGTGCTATGGTTATGACATTGTTAAGAGGTCCAATACTTAATATTTTTGGGACACATGGAAACAGTGCTCAAATCCAACACAATAGTGGTGCAAATCTTCAACATGCAATAAAGGGATCAATTATGATCACAATTGGTTGTTTTAGTTGTGCTTGTTTCATGATTCTACAAACAGTTACACTTGAAACATACCCTGCTGAGCTGTCACTTACAGCATGGATATGTTTATTGGGAACAATTGAAGGTGGCATCGTAGCTTTGATTATGGAAAGGGGTGATTATTCTGTTTGGTCTTTGAATTGGGATACAAAACTTTTGGCTGCGGTTTACAGTGGTGTAGTTTGTTCAGGAATGGCTTATTACATACAAGGAGCTGTAATGAGATATAGAGGTCCAGTTTTTGTAGCAACTTTCAATCCTCTCTGTATGGTTATTGTAGCTATCATGAGCGTTTTCTTTTTGGCCGAGAAAATATACCTCGGAAGGGTGATCGGCGCGGTTGTGATTATTATAGGATTGTATTTAGTGGTGTGGGGTAAAAGCAAAGATTATGACACACCAAGTTCAATTATTAAAGATGAAGCATTACCAGTTAAGGAAGGTACAGATAGCAATGACAAAGAGGAGAATCCAAATCATGAAGTCATCATTAGCAGTAATTTTGTTGTTATAGATTGA 1125 0.3813 MECCNQKMFDRMKPFIAVVFLQFGYAGMDVLSKAALNKGMSNYVLVVYRHAVAFVVIAPFALILEKKVRPKMTFSIFLKLVALSTLEPIIDQNLYFLGMKYTTATFAVAMNNVLPAITFVMACIFKLEKIKMKSVYSQAKVVGTLATVAGAMVMTLLRGPILNIFGTHGNSAQIQHNSGANLQHAIKGSIMITIGCFSCACFMILQTVTLETYPAELSLTAWICLLGTIEGGIVALIMERGDYSVWSLNWDTKLLAAVYSGVVCSGMAYYIQGAVMRYRGPVFVATFNPLCMVIVAIMSVFFLAEKIYLGRVIGAVVIIIGLYLVVWGKSKDYDTPSSIIKDEALPVKEGTDSNDKEENPNHEVIISSNFVVID 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02853 374 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020
Vifa5g02853 374 Pfam EamA-like transporter family 16 154 IPR000620 GO:0016020
Vifa5g02853 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Vifa5g02853 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 331 - -
Vifa5g02853 374 PANTHER WAT1-RELATED PROTEIN 13 333 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02853 Vifa-Chr5 945969020 945972642 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02853 2 369 Nodulin-like Gene Family AT2G37460 62.703 2.20e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02853 - - gmx:100777050 558.91