Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02846 ATGGCATTTGTCTCTGGATTTCAGCGGTTACTTCGCCATTCCCACTCCCACGTCACTTCGATTCGTTTCAATTCAACTCTCACTTCCCCCAAGCTTTTCGTCAGCGGTCTTTCGAGATTGACAACGAATGAAAAGCTTACTGAAGCATTTTCTCCTTTTGGGCAGCTCATGGAAGCTAAGGTGATAATTGACAGAGTCTCTGGAAGATCGAAGGGGTTTGCTTTTGTATCGTATGCAACTGTAGAAGAAGCCGAGAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCGGCCAAACCAAGAGAACCTCGACCTCCTCAGCAATCAGAATCTCAGAAGTCTCAAACAGGGTTCACAGTTAATAAGACCGTTGGATGGTGTGGTTGA 411 0.4453 MAFVSGFQRLLRHSHSHVTSIRFNSTLTSPKLFVSGLSRLTTNEKLTEAFSPFGQLMEAKVIIDRVSGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSESQKSQTGFTVNKTVGWCG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02846 136 SMART rrm1_1 31 104 IPR000504 GO:0003723
Vifa5g02846 136 SUPERFAMILY RNA-binding domain, RBD 29 128 IPR035979 GO:0003676
Vifa5g02846 136 PANTHER NUCLEOLAR PROTEIN 8 20 135 - -
Vifa5g02846 136 Gene3D - 16 130 IPR012677 -
Vifa5g02846 136 FunFam RNA binding protein 17 130 - -
Vifa5g02846 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Vifa5g02846 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 98 IPR000504 GO:0003723
Vifa5g02846 136 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02846 Vifa-Chr5 942544262 942546183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02846 29 134 Eukaryotic Initiation Factors Gene Family AT3G16380 29.245 1.17e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02846 - - gmx:100306326 233.032