Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02845 ATGACGTCATTCTTGAAGCCTGAGAATGCCCTCAAAAGGGCAGAAGAATTGATCAATGTCGGTCAGAAGCAGGATGCTCTGCAGACTCTGCACGACCTTATAACTTCGAAAAGATACCGAGCATGGCAGAAAACTCTAGAACGGATTATGTTTAAGTACGTAGAGCTATGTGTGGACATGAGGAAGGGACGTTTTGCTAAGGACGGGCTTATTCAGTACCGTATCATATGTCAGCAAGTGAATGTTAGCTCGCTGGAGGAGGTGATTAAACATTTTATGCACCTCTCAACAGAGAAAGCTGAGCAAGCACGCAGCCAGGCTCAGGCCTTAGAAGAGGCCCTCGATGTTGATGACTTGGAGGCGGATAAAAGGCCTGAGGACTTGATGCTGAGCTATGTCAGTGGTGAGAAGGGAAAGGATCGATCTGATCGGGAACTTGTTACCCCATGGTTTAAGTTTCTTTGGGAAACTTACAGGACAGTGCTTGAGATATTGCGGAACAACTCCAAATTGGAAGCATTATATGCTATGACAGCTCACCGAGCTTTCCAGTTTTGTAAGCAATATAAAAGAACAACTGAGTTCAGGAGACTGTGTGAAATCATTAGAAATCATTTGGCTAATCTTAACAAGTATCGGGACCAACGAGACCGACCTGATCTTTCTGCTCCTGAAAGCTTGCAATTGTATCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAGCTTGAACTCTGGCAGGAAGCCTTTAGGTCCGTTGAAGATATACATGGGTTAATGTGCATGGTCAAGAAAACACCAAAACCATCTTTGATGACAGTTTACTATGTTAAGTTGACTGAAATATTTTGGATATCTTCAAGTCATTTATATCATGCATACGCTTGGTTCAAACTCTTTTTGTTACAAAAGAGCTTCAACAAAAATCTGAGTCAGAAGGATTTGCAGTTGATAGCTTCATCTGTTGTTCTAGCTGCACTATCAGTGCCTCCTCATGACCGCACTCACGGTGCATCTCATTTAGAACTAGAGCATGAAAAGGAGCGAAATTTGAGGATGGCGAATCTCATAGGCTTTAATCTCGAAACTAAGCCCGATAGCAGAGAAGTGCTCTCAAGGTCATCACTTCTTGCTGAACTGGCATCAAAGGGTGTAATGTCTTGTGTTTCACAAGAAGTGAAAGACATTTACTATCTTTTGGAACATGAATTTCTACCATCGGATCTTGCACTAAAAGTACTACCCTTGCTAAATAAAATTTCAAAATTAGGGGGTAAGTTTACCTTTGCTTCATCGGTTCCAGAAGTGCATTTTTCGCAGTATGTCCCAGCACTTGAGAAGTTAGCTACCTTGAGGTTGCTACAACAGGTGTCTAATGTGTACCAATCGATGAAGATTGAAAACTTAGCTGGGATGATTCCTTTCTTTGAGTTTTCCGTTGTGGAAAAGATTTCCGTAGATGCTGTTAAGCAGAAGTTTCTGTCCATGAAAGTTGACCACATGAAAAATGTTGTAATTTTCTGCAAGACGAGTTTTGAGGCTGATGGCTTGAGGGATCACTTGGCCAGTTTTGCTGAGCAGTTGAATAAGGCGAGGCAAATGATTTGTCCTCCTGATGCAAAACGATCTAAACACGGAGGCTTGCTTCCAACTTTGCCAGAGGTTGTAGCCAAAGAACATAAGAGGCTTCTTGCTCGGAAGTCAATTATTGAGAAGAGGAAAGAGGAACAAGAACGACAGCTTCTTGAACAGGAACGTGAGGAGGAGTCTAAGAGGTTAAGACTGCTTAAAATTACTGAAGAAGCAGAGCGAAAGCGGCTTGAAACTGAGGTTGAGCTGAGGAAAAAACAAAGACTCAAAATGGAAATGGAGGAGAAAGATAAAGAAGAAGCTCAGGCTATACTTCAGGAAGCTGAAAAGCGCTTTAAGAGAAAGGGTAAAAAGCCCATAATAGATGGGGGTGTAATTTCTAAGAAAACCTTGATGGAGTTGGCTTTGATAGAACAACACCGGGAGAAGCAGGAAATGGAGAAAAAACTGCAGAAATTAGCCAAAACCATGGACCATTTGGAAAGAGCAAAGAGAGAAGAAGCTGCTCCGCTTATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGGTTCTTCATGAGCATGAGCAACAACAAGAGGTTGAACTGAGCAGACAGCGCCATGCTGGAGATCTCAATGAAAAAGAGAGGCTTAGTCGAATGATGGGTCATAAAGAGATATATCAAGAGAGAGTTGTCAGTCATCGCCAGGCAGAATTCAACAGATTGAGGAGAGAAAGGGAGGAACGTATATCTAGGATTTTACAAACCAGGAGACAGGAAAGGGAGAAAATGAGGAAGTTGAAGTATTATCTAAAAGTTGAAGAAGATAGAAGGCAAAAATTGCGTGAGGAGGAAGAAGCTCGTAAGCGTGAAGAGGCTGAGAGAAAAAAGAAGGAACAGGCTGAACACCAAGCAAAATTGGACGAGATGGCTGAAAGGAGGAGGAAAAGGGAACAAGAAATTGAAGAAAAAGCTGAGAGGGAAAAGAGGGAAGCATTACTGGGCAGACCAACTGAACCAGCCATGAGGCCTTATGAGCCTCCTGCCCGTCCATTGGAGTCTCGTCCTGCTGTTGCTGTTGCTTCTGCAGTCCCAGCCCCCGGGAAATATGTTCCCAAGTTCCGGCGAGCAGGAGCTGAAACCACAGCTGCTGCTCCTCCAGAAGGAGATCGTTGGGGCAACAGTGGCAGCAGGCCAGATGGTGACAGGTGGGAGCGCGGCACCTCATTTGGCGGGGGTTCAAGGTCATCATCATCATGGTCATCTTCCAGGAATTCCCGTGATCGTCCTTGA 2871 0.4396 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWISSSHLYHAYAWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPDSREVLSRSSLLAELASKGVMSCVSQEVKDIYYLLEHEFLPSDLALKVLPLLNKISKLGGKFTFASSVPEVHFSQYVPALEKLATLRLLQQVSNVYQSMKIENLAGMIPFFEFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSFEADGLRDHLASFAEQLNKARQMICPPDAKRSKHGGLLPTLPEVVAKEHKRLLARKSIIEKRKEEQERQLLEQEREEESKRLRLLKITEEAERKRLETEVELRKKQRLKMEMEEKDKEEAQAILQEAEKRFKRKGKKPIIDGGVISKKTLMELALIEQHREKQEMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQQRLVEERVLHEHEQQQEVELSRQRHAGDLNEKERLSRMMGHKEIYQERVVSHRQAEFNRLRREREERISRILQTRRQEREKMRKLKYYLKVEEDRRQKLREEEEARKREEAERKKKEQAEHQAKLDEMAERRRKREQEIEEKAEREKREALLGRPTEPAMRPYEPPARPLESRPAVAVASAVPAPGKYVPKFRRAGAETTAAAPPEGDRWGNSGSRPDGDRWERGTSFGGGSRSSSSWSSSRNSRDRP 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02845 956 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 946 IPR027512 GO:0005852
Vifa5g02845 956 MobiDBLite consensus disorder prediction 803 956 - -
Vifa5g02845 956 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Vifa5g02845 956 Pfam PCI domain 373 508 IPR000717 -
Vifa5g02845 956 MobiDBLite consensus disorder prediction 803 862 - -
Vifa5g02845 956 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Vifa5g02845 956 Gene3D - 269 342 - -
Vifa5g02845 956 Gene3D - 353 511 - -
Vifa5g02845 956 MobiDBLite consensus disorder prediction 936 950 - -
Vifa5g02845 956 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Vifa5g02845 956 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Vifa5g02845 956 Coils Coil 561 649 - -
Vifa5g02845 956 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Vifa5g02845 956 Coils Coil 790 857 - -
Vifa5g02845 956 Coils Coil 93 120 - -
Vifa5g02845 956 Coils Coil 667 697 - -
Vifa5g02845 956 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 930 IPR027512 GO:0005852
Vifa5g02845 956 Gene3D UVR domain 217 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02845 1 956 Eukaryotic Initiation Factors Gene Family AT4G11420 70.521 0.0 1275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02845 K03254 - gmx:100803796 1411.36