Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02840 ATGACGGCTAAAAAATATGAAGGACGCGCTGTTGGAATAGACCTTGGAACAACGTATTCTTGTATTGCTGTGTGGCTTGATCAGCATAATAGAGCAGAGATAATCCACAATGAACAAGGAAACAGAACCACACCTTCTTTTGTTGCTTTCACCGATGACCAAAGATTGATCGGCGACGCCGCTAAAAACCAGGCTGCAACCAACCCGGAAAACACCGTCTTTGATGCCAAGAGGTTAATTGGTAGGAAATTTAGTGATTCTAATATTCAAAATGATAAGATGTTGTGGCCATTCAAGGTCATTGCCGGTTTCAATGACAAACCCATGATTTCTGTCAAGTACAAGGGTCAAGAGAAAGTGCTATGTGCTGAGGAAATCTCATCTATGATTCTAACTAGGATGCGCCAGGCCGCTGAATCCTTTTTGGAGTTGCCTGTTAAGAATGCAGTTATTACTGTGCCTGCTTATTTCAATGATTCTCAACGGAAAGCCACAATGGATGCTGGTGCAATTGCTGGACTTAATGTTATGCGGATAATCAATGAGCCAACTGCTGCAGCTATTGCTTATGGACTCGATGAAAGAACTAAATGTGTGGGAGAACGAAATATTTTCATCTTTGATCTTGGTGGTGGGACTTTTGATGTGTCTCTCCTTACAATCAATGATAAGGTCTTCCATGTTAAGGCTACTGGAGGAAACACTCATCTCGGCGGGGAGGACTTTGATCATAGAATGGTGAACTACTGTGCACAAGAGTTTAAGAAGAAGAAAAGGGTGGACATCACCGGAAACTCAAGAGCCTTAAGGAGGCTGAGAACTGCGTGCGAGAGAGCAAAAAGGACACTGTCTTTTGCTGTTGTCACAACCATTGAGGTGGATTCTTTGTTTGAGGGAATGGACTTCTTTTGTTTAATCACCCGTGCAAAGTTTGAGGAAATCAATATGGATCTTTTCAATCAGTGTTTGAAAACGGTTGAGAGTTGTCTTATCGATGCCAAGATGGACAAGAGTGCTATACATGATGTTGTACTTGTTGGTGGCTCCTCTAGAATTCCTAAAGTGCAACAGCTATTGCAAGATTTTTTTGCGGGTAAGGATCTATGCAAGATCATTAACCCTGATGAAGCTGTTGCTTATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCTTTAAAAACGTTCCAAGCTTGGTGCTGCAAGATGTTGCACCTTTGTCTCTTGGTATCGAAGTTAAAGGTGATATAATGGATGTGGTAATTAGTAGGAACACTAACATTCCTGTCAAGAAAACAAAAGATTATTTTACATCAACTGATAACCAAACTTCTGTCTCCATTATGGTTTTTGAGGGTGAGAGAGCAAGATCTACCGACAACAATCTACTTGGTTCTTTTGATCTTTCGGGGCTCCCATGTGCTCCTCGTGGTCACCCAATAGAGGTCTGTTTTTCAATAGACGAAAATGGTATTTTGATTGTTTCTGCTAATGAAAAATCTACCGGAAGTCAAAACGAGATTACAATAACTAATGAAAAAGCAAGATTGACATCCATTGAAATTAGAGAAATGATCACCGAAGCTGAAAGCTACCGTGTTGCAGATGAACAATTTCTGGAGAAGGCCAAAGAATTGAATGCATTAGATTACTGTGTTTACAAGATGAAGAATGCTTTAGAGAAGAAGGATATGAAACTAAAGCTGTCTTCACAAGAAAATGAGAAGATCAATTCTGCAATTACTAAGGCCACACATTTGCTTGATATTAACCAGCAGAGTGAAATAAGTGTTCTTGAAAATCATCTGAATGAGCTTGAGAGTCTATTGCGGTTGGTTATAGGCAAATCTGTCTAG 1857 0.405 MTAKKYEGRAVGIDLGTTYSCIAVWLDQHNRAEIIHNEQGNRTTPSFVAFTDDQRLIGDAAKNQAATNPENTVFDAKRLIGRKFSDSNIQNDKMLWPFKVIAGFNDKPMISVKYKGQEKVLCAEEISSMILTRMRQAAESFLELPVKNAVITVPAYFNDSQRKATMDAGAIAGLNVMRIINEPTAAAIAYGLDERTKCVGERNIFIFDLGGGTFDVSLLTINDKVFHVKATGGNTHLGGEDFDHRMVNYCAQEFKKKKRVDITGNSRALRRLRTACERAKRTLSFAVVTTIEVDSLFEGMDFFCLITRAKFEEINMDLFNQCLKTVESCLIDAKMDKSAIHDVVLVGGSSRIPKVQQLLQDFFAGKDLCKIINPDEAVAYGAAVQAALLSEGFKNVPSLVLQDVAPLSLGIEVKGDIMDVVISRNTNIPVKKTKDYFTSTDNQTSVSIMVFEGERARSTDNNLLGSFDLSGLPCAPRGHPIEVCFSIDENGILIVSANEKSTGSQNEITITNEKARLTSIEIREMITEAESYRVADEQFLEKAKELNALDYCVYKMKNALEKKDMKLKLSSQENEKINSAITKATHLLDINQQSEISVLENHLNELESLLRLVIGKSV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02840 618 FunFam Heat shock 70 kDa protein 392 546 - -
Vifa5g02840 618 FunFam Heat shock protein 70 11 201 - -
Vifa5g02840 618 Gene3D - 74 129 - -
Vifa5g02840 618 SUPERFAMILY Actin-like ATPase domain 201 389 IPR043129 -
Vifa5g02840 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 546 IPR029047 -
Vifa5g02840 618 SUPERFAMILY Actin-like ATPase domain 10 193 IPR043129 -
Vifa5g02840 618 FunFam Heat shock 70 kDa 238 321 - -
Vifa5g02840 618 Gene3D - 547 618 IPR029048 -
Vifa5g02840 618 Gene3D - 195 369 - -
Vifa5g02840 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 340 356 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 372 392 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 478 494 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 61 69 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 398 417 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 212 222 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 149 169 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 9 22 - -
Vifa5g02840 618 PRINTS 70kDa heat shock protein signature 39 51 - -
Vifa5g02840 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Vifa5g02840 618 Gene3D Actin; Chain A, domain 4 238 321 - -
Vifa5g02840 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 549 IPR029047 -
Vifa5g02840 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Vifa5g02840 618 PANTHER HEAT SHOCK PROTEIN 70KDA 10 583 IPR013126 GO:0005524|GO:0140662
Vifa5g02840 618 Pfam Hsp70 protein 10 609 IPR013126 GO:0005524|GO:0140662
Vifa5g02840 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 546 616 IPR029048 -
Vifa5g02840 618 FunFam heat shock 70 kDa protein-like 74 129 - -
Vifa5g02840 618 Gene3D - 11 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02840 Vifa-Chr5 941176890 941178833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02840 3 616 Calmodulin-binding Proteins AT3G12580 65.097 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02840 K03283 - gmx:102667578 887.486