Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02836 ATGAGTGCAGAAGTAGAGGAATCAAAAACTACTGAGCAAATTACAAAGAGACACAAGAATGCAAATCTCAACAATGGAATAAAAAGAGAAAATTCTGATGATACTAATTCAAAGGAAAAGCTTGATTACATTCATGTTCGAGCACGTAGTGGTCAAGCCACTAATAGTCATAGCTTATCAGAAAGAATCGTTTCCTTCGATTCGATGCATATGATATTGCTTAGAAGAAGGCGAGAAATTTTACCAGACATTGCTTTCCATGAACCCAGGCAAGTGTTATTCACGTGTCAAGCGTCAACGGTGCTTGCTGACGAAGATATCAGTGAAACAACCGGTTCTTGA 342 0.383 MSAEVEESKTTEQITKRHKNANLNNGIKRENSDDTNSKEKLDYIHVRARSGQATNSHSLSERIVSFDSMHMILLRRRREILPDIAFHEPRQVLFTCQASTVLADEDISETTGS 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02836 113 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 9 63 IPR024097 GO:0006355
Vifa5g02836 113 MobiDBLite consensus disorder prediction 1 39 - -
Vifa5g02836 113 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02836 Vifa-Chr5 939375749 939376189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02836 9 63 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 45.455 1.77e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02836 - - psom:113342208 66.2402