Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02815 ATGGATCAACAAGGGTTACCTCGCTTTAAGAAACCCTTCATTGCAGACGATGAGATAATGGAGCTGCTATGGCAAAACGGTCAAGTTGTCACGCAGAGTCAAAACCAGCGTCATATCAACAACTCACCGCCGGGGAGAAACTCCGACGAGTCCACTCGCGGCCGAACTTCATTGCCGAGGGAGAATCAATATCTGTTCGTGCAAGAAGGAGAAATGGCTCCGGTGCTTCATTATCCTAATAACAATGACGATGTTTCTCCTTTGAATCAACCTTTCAGCGCCGATTTCCTTAATAATGATACCATGCAAACTCCACAAATGAGATCTGAGCAGGTGCCTCCGAACTTCCTTAATAATGGTACCATGCAAGCTCCACAAATGAGGTCAGAGGTGCCCCCGAACTTCGCGTCCTTTGCGAGGCACGGTGTTAGAGCCGAACCAGAAGCGTTACCTGCTGGGGAATCAATAGTAGATTCATGTGATACACCTGAAGTGGCTGAAGGAGAAACCAGCTTGACGGCACCTTCGGCAACTTTTGAGGAAACAGATGGTTGGAGCAGCGATTTAACGGATTATTGGAGTAGCCATGTGGAAATGGAGGAGGACCCCAAGCGGAAGAGAAGGGATGCGGAGGAATGGGAGTATCAAAGCCAGGTCAATAGTCTCTCAGAGAGGAGGCGCCGTGATCTAATTAATGAAAAGATGAGAGTTCTGCAACAACTTATACCTCGATCTAATAAGTTTGACGAAGAGTCTATCCTCGACGAGGCAATTGAGTACATGAAGTCACTGCAGTTACAAGTTCAGAGAATACAATGTATGCAGATGATGTCAATGGAATGCAGCATGGTACCAATGATGTTTCCTGGAACCCAGCGGTATATGCCACCACCAATTGGAATGGGAATAAACAGGCCAGTAATGCCGTTTCCAAATATGTTTCCTGATGCAGTTTCAGTTAATGCAGAATCAGCCAATGAACCAAACAAATGTCAGCAAGTGAGAAGGCGGCCGCCAGTCAGGAGATAA 1029 0.4674 MDQQGLPRFKKPFIADDEIMELLWQNGQVVTQSQNQRHINNSPPGRNSDESTRGRTSLPRENQYLFVQEGEMAPVLHYPNNNDDVSPLNQPFSADFLNNDTMQTPQMRSEQVPPNFLNNGTMQAPQMRSEVPPNFASFARHGVRAEPEALPAGESIVDSCDTPEVAEGETSLTAPSATFEETDGWSSDLTDYWSSHVEMEEDPKRKRRDAEEWEYQSQVNSLSERRRRDLINEKMRVLQQLIPRSNKFDEESILDEAIEYMKSLQLQVQRIQCMQMMSMECSMVPMMFPGTQRYMPPPIGMGINRPVMPFPNMFPDAVSVNAESANEPNKCQQVRRRPPVRR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02815 342 Gene3D - 208 276 IPR036638 GO:0046983
Vifa5g02815 342 MobiDBLite consensus disorder prediction 323 342 - -
Vifa5g02815 342 SMART finulus 221 270 IPR011598 GO:0046983
Vifa5g02815 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Vifa5g02815 342 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Vifa5g02815 342 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 322 IPR031066 -
Vifa5g02815 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 279 IPR036638 GO:0046983
Vifa5g02815 342 CDD bHLH_AtPIF_like 218 284 IPR047265 -
Vifa5g02815 342 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02815 Vifa-Chr5 932522906 932533925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02815 16 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 35.849 6.71e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02815 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02815 - - tpra:123888958 316.235