Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02814 ATGGATCAACAAGGGTTACCTCGCTTTAAGAAACCCTTCATTGCAGACGATGAGATAATGGAGCTGCTATGGCAAAACGGTCAAGTTGTCACGCAGAGTCAAAACCAGCGTCATATCAACAACTCACCGCCGGGGAGAAACTCCGACGAGTCCACTCGCGGCCGAACTTCATTGCCGAGGGAGAATCAATATCTGTTCGTGCAAGAAGGAGAAATGGCTCCGGTGCTTCATTATCCTAATAACAATGACGATGTTTCTCCTTTGAATCAACCTTTCAGCGCCGATTTCCTTAATAATGATACCATGCAAACTCCACAAATGAGATCTGAGCAGGTGCCTCCGAACTTCCTTAATAATGGTACCATGCAAGCTCCACAAATGAGGTCAGAGGTGCCCCCGAACTTCGCGTCCTTTGCGAGGCACGGTGTTAGAGCCGAACCAGAAGCGTTACCTGCTGGGGAATCAATAGTAGATTCATGTGATACACCTGAAGTGGCTGAAGGAGAAACCAGCTTGACGGCACCTTCGGCAACTTTTGAGGAAACAGATGGTTGGAGCAGCGATTTAACGGATTATTGGAGTAGCCATGTGGAAATGGAGGAGGACCCCAAGCGGAAGAGAAGGGATGCGGAGGAATGGGAGTATCAAAGCCAGGTCAATAGTCTCTCAGAGAGGAGGCGCCGTGATCTAATTAATGAAAAGATGAGAGTTCTGCAACAACTTATACCTCGATCTAATAAGTTTGACGAAGAGTCTATCCTCGACGAGGCAATTGAGTACATGAAGTCACTGCAGTTACAAGTTCAGATGATGTCAATGGAATGCAGCATGGTACCAATGATGTTTCCTGGAACCCAGCGGTATATGCCACCACCAATTGGAATGGGAATAAACAGGCCAGTAATGCCGTTTCCAAATATGTTTCCTGATGCAGTTTCAGTTAATGCAGAATCAGCCAATGAACCAAACAAATGTCAGCAAGTGAGAAGGCGGCCGCCAGTCAGGAGATAA 1011 0.4698 MDQQGLPRFKKPFIADDEIMELLWQNGQVVTQSQNQRHINNSPPGRNSDESTRGRTSLPRENQYLFVQEGEMAPVLHYPNNNDDVSPLNQPFSADFLNNDTMQTPQMRSEQVPPNFLNNGTMQAPQMRSEVPPNFASFARHGVRAEPEALPAGESIVDSCDTPEVAEGETSLTAPSATFEETDGWSSDLTDYWSSHVEMEEDPKRKRRDAEEWEYQSQVNSLSERRRRDLINEKMRVLQQLIPRSNKFDEESILDEAIEYMKSLQLQVQMMSMECSMVPMMFPGTQRYMPPPIGMGINRPVMPFPNMFPDAVSVNAESANEPNKCQQVRRRPPVRR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02814 336 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 316 IPR031066 -
Vifa5g02814 336 Gene3D - 211 274 IPR036638 GO:0046983
Vifa5g02814 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Vifa5g02814 336 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Vifa5g02814 336 MobiDBLite consensus disorder prediction 316 336 - -
Vifa5g02814 336 CDD bHLH_AtPIF_like 218 278 IPR047265 -
Vifa5g02814 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 287 IPR036638 GO:0046983
Vifa5g02814 336 SMART finulus 221 270 IPR011598 GO:0046983
Vifa5g02814 336 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02814 Vifa-Chr5 932522906 932533925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02814 16 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 31.778 1.35e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02814 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02814 - - tpra:123888958 322.013