Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02810 ATGGATCAACAGGGGTTACTTCGCCCTAAGAAACCCTTCATTGCAGACGATGAGATAATGGAGCTACTATGGCAAAACGGTCAAGTTGTCACGCAGACTCAAAACCACCGCCATATCAACAATCCACCGCCGGGGAGAAACTCCGATGACTCCACTCGCGGCCGAGCTTCATCGCCGAGGGAGAATCAGTATCTCTTTATGCAAGAAGGAGAAATGGCTTCGTGGCTTCATTATCCTATTAACGATGATTCTCCTTTGGATCAATCCTTCGGCGCCGATTTCCTTAATCAGCAGTCGGTTGTCAATAACAACAGTTCCATGCAAACTCCACAACGGCGGTCCGAGCAGGTGCCTAACTTCGCATACTTTGCGAGACACGGCGTTGGTGTTAGAGCCGAACCAGAGAGGCTGTCTATAAGGGAATCAACAATAGAAGATTCGTGTGACACGCCAGTTGTGATGGTAACGGCTGTATCGGAGACGGCAGAAGGAGAAATCGGCTTGACGGCGCGTTCAACTACGTTTGACGAACCGGATGGGTCGAGTAGCGATGTAGAACCGGTTCGGGAGATAGCGGAGCAGGGCCGGAAGCGGAAGGGAAGGGAGGCGGAGGAATGGAAGTATCAAAACGAGGATGTTGATTTTGAATCTGCGGAAGCCAAAGATAAATTCAGGGGATCATCAACAAAGAGATCTCGCGCTGCTGAGGTCCATAGTCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCCGACAAAGCGTCTATGCTGGATGAGGCAATCGAGTACTTGAAATCACTGCAGTTACAAGTTCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCACCAATTAGAATGGGAATAAACAGGCCAGTAATGCCGTTTCCCAATATGTTTTCTGGTTCTGCTTTGCCTGCAAATTTTGGACCAAGGTTCGCTATGCCTCCTTTCCACACGCCGCATGTTCCTACACCTGATTCATTCACAATGCCAGCAGCAAATCTGGCAGATAATAACATGCCCACCTCAGTTTCCACACATGATTCAAATAAGCCAGGTATCCCAAACTTCACTAATCCTTATCAACAATACCTTGGACCCCACCAGACGCAATTTCAGTTAATGCAGAATCAGCCAATGAATCAAACAAATGTCAGCAAGTTAGAAAGTGGCCGTCAGTCAGCTGTTACCACTAGCTATCAAAATGGTACTACTAGTATTATTTTATATTTTCTGCTACCCATCTACAGTATGCCAAGTTTTGTCTGTAACGGAAGGAACTTTTTATCAGTTCTCAGTTGCAAGCTAATAATATATGCATTACACCGCTAA 1410 0.4638 MDQQGLLRPKKPFIADDEIMELLWQNGQVVTQTQNHRHINNPPPGRNSDDSTRGRASSPRENQYLFMQEGEMASWLHYPINDDSPLDQSFGADFLNQQSVVNNNSSMQTPQRRSEQVPNFAYFARHGVGVRAEPERLSIRESTIEDSCDTPVVMVTAVSETAEGEIGLTARSTTFDEPDGSSSDVEPVREIAEQGRKRKGREAEEWKYQNEDVDFESAEAKDKFRGSSTKRSRAAEVHSLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPIRMGINRPVMPFPNMFSGSALPANFGPRFAMPPFHTPHVPTPDSFTMPAANLADNNMPTSVSTHDSNKPGIPNFTNPYQQYLGPHQTQFQLMQNQPMNQTNVSKLESGRQSAVTTSYQNGTTSIILYFLLPIYSMPSFVCNGRNFLSVLSCKLIIYALHR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02810 469 FunFam Basic helix-loop-helix transcription factor 228 291 - -
Vifa5g02810 469 Pfam Helix-loop-helix DNA-binding domain 237 283 IPR011598 GO:0046983
Vifa5g02810 469 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 413 IPR031066 -
Vifa5g02810 469 SMART finulus 239 288 IPR011598 GO:0046983
Vifa5g02810 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 299 IPR036638 GO:0046983
Vifa5g02810 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 282 IPR011598 GO:0046983
Vifa5g02810 469 MobiDBLite consensus disorder prediction 220 243 - -
Vifa5g02810 469 MobiDBLite consensus disorder prediction 172 205 - -
Vifa5g02810 469 CDD bHLH_AtPIF_like 233 296 IPR047265 -
Vifa5g02810 469 Gene3D - 228 291 IPR036638 GO:0046983
Vifa5g02810 469 MobiDBLite consensus disorder prediction 31 59 - -
Vifa5g02810 469 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02810 Vifa-Chr5 931366011 931369432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02810 16 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 35.800 1.14e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02810 HLH 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02810 - - tpra:123888958 569.696