Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02808 ATGGCATTACCTGATAACTTTGCATCCAAGTTAACAGCACTCGTTGTAGATGACACTGAAATCATTCGAAAGATTCATCAAAAGATGTTGAGTAGTTTAGGAGTGAAAAGTCAAGGTGTGAAAAATGGAAAAGAAGCATTGGAAATTCATAGCTATGGACAAAAATTTGACCTAATTCTCATGGATAAAGATATGCCTATCATGAATGGTGTTGAGGCAACAAAGGAACTCCGTGCAATGGGAATTTGTAGCACTATTGTTGGAGTGTCATCACATTCCATGGAAGAGGAAATAGTGAAGTTTATGGAAGCAGGACTAGATGAGTATCAAGAGAAACCTTTGAACAAAGTGAAACTTAGTTCTATTATTGACAAGATCAAACACAATCTCATATCCAAGTGA 402 0.3632 MALPDNFASKLTALVVDDTEIIRKIHQKMLSSLGVKSQGVKNGKEALEIHSYGQKFDLILMDKDMPIMNGVEATKELRAMGICSTIVGVSSHSMEEEIVKFMEAGLDEYQEKPLNKVKLSSIIDKIKHNLISK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02808 133 SUPERFAMILY CheY-like 10 126 IPR011006 -
Vifa5g02808 133 Gene3D - 3 131 - -
Vifa5g02808 133 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 129 - -
Vifa5g02808 133 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Vifa5g02808 133 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Vifa5g02808 133 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Vifa5g02808 133 SMART REC_2 11 123 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02808 Vifa-Chr5 930613457 930613966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02808 11 123 Response Regulator Gene Family AT3G04280 47.826 1.60e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa5g02808 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02808 - - gmx:100794931 173.711