Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02804 ATGAAGATCATTGCGGCATATTTGTTGGCCGTTTTGGGGGGTAACACAGCCCCTTCCGCAGTTGATGTCAAACGCATCCTAGGCTCAGTTGGAGTTGAGGGTGAGGATGAGCAGATAGAGTTGCTGTTGAGGGAAGTCAAGGGCAAAGATTTTGCGGAACTAATTGCCAGTGGAAGAGAGAAATTGGCTTCAGTTCCTTCTGGTGGAGGAGCTATTGCTGTTTCCGCTGCATCTGCTGCCGCACCTGCGGCTGAAGCAAAGGAAGAAAAGAAGGTCAAAGAAAAAGAAGAGTCTGATGATGATATGACCTTTAGTTTGTTTGACTAG 327 0.474 MKIIAAYLLAVLGGNTAPSAVDVKRILGSVGVEGEDEQIELLLREVKGKDFAELIASGREKLASVPSGGGAIAVSAASAAAPAAEAKEEKKVKEKEESDDDMTFSLFD 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02804 108 MobiDBLite consensus disorder prediction 84 102 - -
Vifa5g02804 108 CDD Ribosomal_P2 1 108 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa5g02804 108 Pfam 60s Acidic ribosomal protein 18 107 - -
Vifa5g02804 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 108 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa5g02804 108 Gene3D - 1 59 IPR038716 -
Vifa5g02804 108 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vifa5g02804 108 Hamap 50S ribosomal protein L12 [rpl12]. 2 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa5g02804 108 MobiDBLite consensus disorder prediction 78 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02804 Vifa-Chr5 929130179 929130505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02804 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 75.714 8.89e-33 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02804 K02943 - csav:115697224 115.546