Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02800 ATGGAGAATTTATTTCGTCTATCTGATCACCAAGATTTCATCTCCCGCCGTTGCATTTGGGTCAATGGACCTGTGATCATAGGCGCAGGTCCATCAGGCCTAGCAACGGCGGCATGTCTTAGAGAACAAGGAGTGCCCTTCATTGTTCTCGAAAGAGCTGATTGTATAGCATCGCTATGGCAAAGAAGAACCTACGACAGATTGAAACTTCACCTCCCAAAACAATTCTGTCAACTACCTAACCTTCCATTCCCTGATGATTTCCCTGAATACCCTTCAAAGAAACAGTTCATAAACTACCTTGAAACCTATGCTAACAAATTCGAAATCAACCCGCAATTCAACGAGTGCGTTCAATCTGCTAAGTATGATGAAACCAGTGGATTATGGAGGGTGAAAACCAATGAAGTTGAGTATATTTGTAGATGGCTTGTTGTTGCTACGGGCGAAAATGCTGAGTGTGTGACTCCTGAGATTGAAGGACTTTCTGAATTCAAAGGTGAAGTTGTTCATGCTTGTGATTACAAGTCAGGTCAAAATTTCAAAGGAAAGAAAGTTCTTGTTGTTGGTTGCGGAAATTCAGGAATGGAACTCTCTCTTGATCTTAGCAACCATCATGCTTTACCTTCAATGGTTGTTCGTAGCTCGGTTCACGTGTTACCCCGAGAAATATTTGGAATATCGACATTCGAATTAGCAGTTATGATGTTAAAATGGCTACCACTTTGGATTGTGGACAAACTTCTTCTAATTTTGACATGGTTTCTTTTGGGTGACATGGAAAAGTTTGGTATCAAAAGGCCTGCAATGGGTCCTTTACAGCTGAAGAACACAGAAGGAAAAACACCGGTTTTGAATATTGGCACCTTGGACAAAATTAGATCCGGTGATATAAAAGTTGTTCCTGGAATCAACAAGTTTCATAAAAACGGCCAAGTCGAACTTGTTAACGGCCAAAAGATCGATGTTGATGCTGTTGTTCTTGCTACTGGTTATAGGAGCAATGTCCCTTCTTGGCTTCAGGAAGGTGAATTTTTCTCGAAAAACGGATATCCAAAGATGCCATTTCCACATGGTTGGAAAGGAAACTCAGGACTGTATGCTGTAGGGTTCACAAAGAGAGGGCTTTCTGGTGCTTCATCTGATGCTGTTAAAATTGCACAAGATATTGGAAATGTTTGGAAACATGAGACTAAACAGAAGAAGCAACGCAATACTGCTTGTCATAGACGTTGCATTTCGCAATTCTAG 1251 0.4109 MENLFRLSDHQDFISRRCIWVNGPVIIGAGPSGLATAACLREQGVPFIVLERADCIASLWQRRTYDRLKLHLPKQFCQLPNLPFPDDFPEYPSKKQFINYLETYANKFEINPQFNECVQSAKYDETSGLWRVKTNEVEYICRWLVVATGENAECVTPEIEGLSEFKGEVVHACDYKSGQNFKGKKVLVVGCGNSGMELSLDLSNHHALPSMVVRSSVHVLPREIFGISTFELAVMMLKWLPLWIVDKLLLILTWFLLGDMEKFGIKRPAMGPLQLKNTEGKTPVLNIGTLDKIRSGDIKVVPGINKFHKNGQVELVNGQKIDVDAVVLATGYRSNVPSWLQEGEFFSKNGYPKMPFPHGWKGNSGLYAVGFTKRGLSGASSDAVKIAQDIGNVWKHETKQKKQRNTACHRRCISQF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02800 416 PRINTS FAD-dependent pyridine nucleotide reductase signature 185 203 - -
Vifa5g02800 416 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Vifa5g02800 416 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 25 410 - -
Vifa5g02800 416 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 352 IPR036291 -
Vifa5g02800 416 SUPERFAMILY FAD/NAD(P)-binding domain 25 287 IPR036188 -
Vifa5g02800 416 FunFam Flavin-containing monooxygenase 24 399 - -
Vifa5g02800 416 Gene3D - 23 402 IPR036188 -
Vifa5g02800 416 PRINTS Pyridine nucleotide disulphide reductase class-II signature 23 45 - -
Vifa5g02800 416 PRINTS Pyridine nucleotide disulphide reductase class-II signature 181 205 - -
Vifa5g02800 416 PRINTS Pyridine nucleotide disulphide reductase class-II signature 142 150 - -
Vifa5g02800 416 Pfam Flavin-binding monooxygenase-like 26 337 IPR020946 GO:0004499|GO:0050660|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02800 Vifa-Chr5 926760697 926762278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02800 K11816 - gmx:100819987 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02800 5 926760697 926762278 Vifa5g02800 5 926760697 926762278 ECH
Vifa5g02800 5 926760697 926762278 Vifa3g00287 3 33275403 33276881 PCT
Vifa3g01856 3 481201560 481211113 Vifa5g02800 5 926760697 926762278 PCT