Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02799 ATGGCTGCTGCTTCTGCCAATCTTATTGTTGGGACTCATATTTGGTTGGAGGATTCTGATGTAGCTTGGATAGATGGCGAGGTCTTGGAGATTAATGGAGAACAAATCAAAGTCCTTTGCACTTCTGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACCGAAGTTCCGCCGTGTGGAGTAGATGATATGACAAAGCTCGCGTACCTGCATGAACCCGGAGTCTTAAATAATCTGAGATCAAGATACGAAATCAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTCATAAAACTTCCTCATTTATATGATAGCCATATGATGGCACAATACAGAGGAGCAGCATTTGGTGAGTTAAGTCCACATCCCTTTGCTGTTGCCGATGCAGCATATAGGCTCATGATAAATGATGGAATCAGCCAGTCAATATTGGTGAGTGGTGAAAGTGGCGCTGGTAAAACAGAAAGTACTAAGTTACTCATGCGATATCTTGCTTACATGGGACGGAGAGTGGCTGTTGCTGAAGGTAGAACTGTCGAGCAAAAAGTCCTCGAGTCAAATCCCGTCCTAGAAGCTTTTGGCAATGCAAAGACTGTGAGGAACAATAATTCAAGTCGGTTTGGTAAGTTTGTGGAGATTCAATTTGATAAAAAAGGAAGAATATCAGGCGCTGCTATCAGAACTTATCTTCTGGAAAAATCACGTGTTTGCCAAGTGTCAGATCCTGAGAGGAATTATCATTGTTTCTACATGCTCTGTGCTGCACCTACAGAGGAAGTTAAGAAGTACAAATTAGGGCATCCAAGAACGTTTCATTATCTGAATCAATCAAATTGCTATGAATTACCAGGGGTCGATGAATCTAAAGAATATAGTGCTATAAGAAACGCAATGGATGTTGTTGGAATAGTTTCTGAGCAACAGGATGCAATATTTCAAGTTGTTGCTGCAATTTTGCATCTTGGGAACATTGAATTTGTAAAAGGGAAGGAGATAGATTCATCTATGCCCAAAGATGATAAATCCCGGTTCCACCTACAGACTGCAGCCGAGCTTTTTATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGCGTACTTGTTACTCGTGATGAAACAGTTACAAGATGGCTGGATCCAGAAGCTGCTGCACAAAGTCGAGATGCGTTGGCTAAGATTGTATACACAAGATTGTTTGACTGGTTGGTTGGTACAATAAATAATTCCATTGGCCAAGATCCTGAGTCAAAATCCATAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAGCATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAAATTGATTGGAGTTACATTGAATTTGTGGATAATCAAGATATTCTGGATCTGATTGAAAAGAAACCTGGTGGCATTATTTCGCTTTTGGACGAAGCTTGCATGTTTCCTAGATCAACACATGAAACTTTTTCCCAAAAGCTGTATCAGACTTTCAGAGACCATAAAAGGTTTAGCAAGCCCAAATTATCACGTAGTGACTTCACAATATGCCATTATGCCGGTGATGTCACTTATCAAACTGAGTTTTTCCTTGACAAGAACAAAGATTATGTTGTTGCGGAACATCAGGCACTTCTTAATGCTTCCAAATGCTCCTTTGTATCGGGCTTGTTTCCCCCTTCACCCGTGGAAACTTCTAAACAATCAAAGTTCTCTTCAATAGGTTCCGGATTTAAGCTACAATTGCAATCTTTACTTGAAACTCTAAGTTCCAGTGAGCCACACTACATTCGATGTGTGAAACCTAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCAGCAACTGCGCTGCGGGGGAGTTATGGAAGCAATTAGGATTAGCTGTGCTGGATATCCCACTAGGAAAACTTTTGATGAATTTGTCGATCGATTTGGCCTTCTTGCTTCTGAAGCATTGGACAGAAGTTCTGACGAGACCACTGCTTGCAAGAGGATTCTCAAGAATGTTCGACTTGAGGGTTATCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAAATGGCAGAACTAGATACCCGTAGAAGTGAGATCTTAGGAAAGTCAGCAAGTATTATTCAGAGGAAAGTCCGCTCCTATTTGGCACGTCAGAGTTTCATTTCGCTTCGTTTGTCAGCTGTGCAGATTCAAGCTGCATGCAGAGGACAACTTGCGAGGCAAGTTTTCGAGGGATTGCGGCGGGAAGCTTCTAGTCTTCTCATTCAAAGGTGTCTCCGCATGCATATGGCTAAGAAGGCGTACAAAGAATTGTATGTCTCTGCTGTCTCTATCCAGACTGGTATGCGGGCAATGGCTGCTCGATGTGACCTACACTTCAGAAGAAGAACTGCTGCAACGATTGTCGTTCAGAGCCACTACAGGAAATACTTGGCACAACTTCATTTCACGAAATTAAAGAAGGCAGCAATTGCAACACAATGTGCATGGAGAGGAAAAGTTGCCCGGCGAGAATTGCAGAAACTCAAGATGGCTGCGAGAGAAACAGGGGCTCTCCAAGATGCCAAAAATAAGCTTGAAAAACAAGTTGAAGACCTTACATTGAAGTTGCAGCTGGAAAAACATATAAGGGTGGCCATTGAAGAAGCCAAAACAAAAGAAAATGAAAGATTACAGTCAGAGTTGCTAGAGATGCAATTTAAGTTCAAAGAAACGAAATCACTTCTGGAAAAGGAGCGGGAGGCTACAAAAATATTGGAGGAGAAAGTTCCTGTCATAGAAGAGGTTCCAGTTGTTGACCATGCTTTGTTGGAGAAACTAAGTAGTGAAAACGAGAAACTCAAGAACTTGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTATGAAGAGGAAACTAAAGTTAGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCAAAAGTAATCCAGATGAAGACTGCCATGCAAAGGCTTGAAGAGAAATTTGCAGACATGGAACTTGCAAAACATATTCTTCAAAATCAACCTCTGTTAAACCTGTCTGTGAAAACGACAGTGGAGAACCTCTCTACTCCTGTATCTGAGAAGTTGGTAAATGGTCACCATGCAGCAGAAGAACAGAATGACGTTGATGCATTTGTTACACCTGTGAAAGAGAAACAATTTGGCACCGAATCTGACTCAAAATTGAAGAGATCATGCAGTGAACGACGTAATGGGAGTTTCGACTCACTTGTCAAATGTGTTAGTAAAAACATTGGGTTCAATCATGGAAAGCCTATTGCTGCATTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGATGAAAGATCTAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCCGCAATTGAGGATCAAGATGACAATGATCTTATGGCCTATTGGATGTCAAATTTATCAGCGTTATTGTTTCTACTTGAACAAAGCCTGAATACTGGGAATTCAACAAATTCAACCCCAGTTGGAAAACCGCCTAATCCAACTTCCCTTTTTGGAAGAATGACTAAGAGTTTTCTTTCATCCCCTTCTTCTGCCAGCTTTACTTCCCCTTCATCAGTGGTTGTACGCAAGGTAGAGGCTAAGTACCCTGCTTTACTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATTGTTCGAGATAACTTGATGCAGGAGTTAACATCGGTTCTTGCACTATGTATCCAGGCACCAAGAACATCAAAGGGAGTGTTACGCCCTGGCCGATCCCTCGGTAAAGATTCCCCAATGGCTCACTGGCAGAGTATTATCGCATCCCTCAACACCCTCCTATGCACATTGAAAGAGAACTTTGTGCCTCCAGTTCTTATCCGCAAAATCTTCAGTCAAACGTTCTCATATATCAATGTGCAACTCTTCAATAGTCTTCTCGTTCGTCCGGGTTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGACTAGCTGAATTAGAGTTGTGGTGTTGCCAAGCAAGGGAGGAGTATGCAGGAACGTCTTGGGATGAACTCAAACACATAAGACAGGCTGTTGGGTTCTTGGTTATTCATCAGAAGTATAGGATTTCGTACGAAGAAATCGTTAATGATTTATGCCCTATTTTGAATGTCCAGCAGCTGTGTAAAATATGTACACTTTATTGGGATGATAACTACAATACACAAAGCGTATCACCACATGTCCTTGCTAGCATGAGGATGGACTCCAATAATCCTCATAGCGATTCTTTCTTGTTGGATGACAGTTTTAGCATTCCCTTCTCAGTGGATGACCTCTCTGCATCACTACAAGAGAAGGACTTCTTAGACATGAAACCAGCAGATGCACTTCTTGAGAATCCAGCATTCCAATTTTTAAATGAGTAA 4536 0.4081 MAAASANLIVGTHIWLEDSDVAWIDGEVLEINGEQIKVLCTSGKTVVVKASSIYHKDTEVPPCGVDDMTKLAYLHEPGVLNNLRSRYEINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYRGAAFGELSPHPFAVADAAYRLMINDGISQSILVSGESGAGKTESTKLLMRYLAYMGRRVAVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLEKSRVCQVSDPERNYHCFYMLCAAPTEEVKKYKLGHPRTFHYLNQSNCYELPGVDESKEYSAIRNAMDVVGIVSEQQDAIFQVVAAILHLGNIEFVKGKEIDSSMPKDDKSRFHLQTAAELFMCDAKALEDSLCKRVLVTRDETVTRWLDPEAAAQSRDALAKIVYTRLFDWLVGTINNSIGQDPESKSIIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIISLLDEACMFPRSTHETFSQKLYQTFRDHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLNASKCSFVSGLFPPSPVETSKQSKFSSIGSGFKLQLQSLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLASEALDRSSDETTACKRILKNVRLEGYQIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKVRSYLARQSFISLRLSAVQIQAACRGQLARQVFEGLRREASSLLIQRCLRMHMAKKAYKELYVSAVSIQTGMRAMAARCDLHFRRRTAATIVVQSHYRKYLAQLHFTKLKKAAIATQCAWRGKVARRELQKLKMAARETGALQDAKNKLEKQVEDLTLKLQLEKHIRVAIEEAKTKENERLQSELLEMQFKFKETKSLLEKEREATKILEEKVPVIEEVPVVDHALLEKLSSENEKLKNLVSSLEKKIDETEKRYEEETKVSEERLKQALDAESKVIQMKTAMQRLEEKFADMELAKHILQNQPLLNLSVKTTVENLSTPVSEKLVNGHHAAEEQNDVDAFVTPVKEKQFGTESDSKLKRSCSERRNGSFDSLVKCVSKNIGFNHGKPIAAFTIYKCLLHWKSFEDERSSVFDRLIQMIGSAIEDQDDNDLMAYWMSNLSALLFLLEQSLNTGNSTNSTPVGKPPNPTSLFGRMTKSFLSSPSSASFTSPSSVVVRKVEAKYPALLFKQQLTAYLEKIYGIVRDNLMQELTSVLALCIQAPRTSKGVLRPGRSLGKDSPMAHWQSIIASLNTLLCTLKENFVPPVLIRKIFSQTFSYINVQLFNSLLVRPGCCTFSNGEYVKAGLAELELWCCQAREEYAGTSWDELKHIRQAVGFLVIHQKYRISYEEIVNDLCPILNVQQLCKICTLYWDDNYNTQSVSPHVLASMRMDSNNPHSDSFLLDDSFSIPFSVDDLSASLQEKDFLDMKPADALLENPAFQFLNE 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02799 1511 Gene3D - 254 312 - -
Vifa5g02799 1511 Gene3D Kinesin motor domain 66 664 IPR036961 -
Vifa5g02799 1511 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Vifa5g02799 1511 FunFam Myosin XI D 737 786 - -
Vifa5g02799 1511 ProSiteProfiles Dilute domain profile. 1160 1461 IPR002710 -
Vifa5g02799 1511 Pfam Myosin N-terminal SH3-like domain 10 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 Gene3D - 441 625 - -
Vifa5g02799 1511 ProSiteProfiles IQ motif profile. 739 766 IPR000048 GO:0005515
Vifa5g02799 1511 Coils Coil 879 926 - -
Vifa5g02799 1511 Gene3D - 668 735 - -
Vifa5g02799 1511 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vifa5g02799 1511 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 PRINTS Myosin heavy chain signature 150 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 PRINTS Myosin heavy chain signature 93 112 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 SMART MYSc_2a 58 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 SMART iq_5 807 829 IPR000048 GO:0005515
Vifa5g02799 1511 SMART iq_5 759 781 IPR000048 GO:0005515
Vifa5g02799 1511 SMART iq_5 855 877 IPR000048 GO:0005515
Vifa5g02799 1511 SMART iq_5 832 854 IPR000048 GO:0005515
Vifa5g02799 1511 SMART iq_5 784 806 IPR000048 GO:0005515
Vifa5g02799 1511 SMART iq_5 736 758 IPR000048 GO:0005515
Vifa5g02799 1511 Pfam DIL domain 1337 1440 IPR002710 -
Vifa5g02799 1511 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Vifa5g02799 1511 CDD MyosinXI_CBD 1111 1480 IPR037975 GO:0007015
Vifa5g02799 1511 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Vifa5g02799 1511 FunFam unconventional myosin-Va 835 883 - -
Vifa5g02799 1511 Gene3D - 787 834 - -
Vifa5g02799 1511 Gene3D - 835 884 - -
Vifa5g02799 1511 Gene3D - 737 786 - -
Vifa5g02799 1511 ProSiteProfiles Myosin motor domain profile. 63 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 787 IPR027417 -
Vifa5g02799 1511 CDD MYSc_Myo11 77 722 IPR036018 -
Vifa5g02799 1511 Coils Coil 974 1050 - -
Vifa5g02799 1511 FunFam Myosin 2 314 432 - -
Vifa5g02799 1511 SMART DIL_2 1336 1443 IPR002710 -
Vifa5g02799 1511 FunFam Myosin heavy chain 254 309 - -
Vifa5g02799 1511 Pfam IQ calmodulin-binding motif 835 853 IPR000048 GO:0005515
Vifa5g02799 1511 Pfam IQ calmodulin-binding motif 788 806 IPR000048 GO:0005515
Vifa5g02799 1511 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Vifa5g02799 1511 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
Vifa5g02799 1511 Pfam IQ calmodulin-binding motif 858 876 IPR000048 GO:0005515
Vifa5g02799 1511 Pfam Myosin head (motor domain) 65 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa5g02799 1511 PANTHER MYOSIN 58 1449 - -
Vifa5g02799 1511 FunFam Class V myosin 441 585 - -
Vifa5g02799 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 885 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02799 Vifa-Chr5 924951898 924962929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02799 4 1510 Myosins gene family AT5G43900 71.768 0.0 2239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02799 K10357 - gmx:100795648 2541.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02799 5 924951898 924962929 Vifa5g02799 5 924951898 924962929 ECH
Vifa5g02799 5 924951898 924962929 Vifa3g01227 3 319287843 319315998 PCT