Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02791 ATGGTTGGTATAACTGATGACAAAGGTAAACAAGTAATGTTATGTGATAGTGAAGATAGTGAAGATGATGATTTTCCACCAACCACCGATGAAAGAATCATAAGAGCACTTGTTGTGCACCATGATGATCACATTGTAAAGACTCATGAAGTTATGTTGAATACACTTGATGTGGAAACTCATTCAGTGAAAACTAGCCAAGAAGCTATGAAATTAATTTGTGTTGAGGAAGTCTACGATTTAATTCTCCTTGCTAGGTATTTACCTATCATTGATGGAGTTCAGATGACGAAGATGCTGCGAGACATGGAGTATCCAACAACGATTGTTGGCGTGACGCGCCTCCTTACAGAATCACAGCGGGAAGATTTTTTTAGTGCAGGGCTAGATGGTTGCTTTGATAACGAGAGACCCTTGACAGATAAAACGCTTGCAGTCATTGTTGAAAGTATTCCCCGTCGCCAAACCTGGAAGAAAAGAAATATTTATAGTACAATTTACCAATCTTTTTGA 513 0.386 MVGITDDKGKQVMLCDSEDSEDDDFPPTTDERIIRALVVHHDDHIVKTHEVMLNTLDVETHSVKTSQEAMKLICVEEVYDLILLARYLPIIDGVQMTKMLRDMEYPTTIVGVTRLLTESQREDFFSAGLDGCFDNERPLTDKTLAVIVESIPRRQTWKKRNIYSTIYQSF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02791 170 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 155 - -
Vifa5g02791 170 SMART REC_2 34 147 IPR001789 GO:0000160
Vifa5g02791 170 SUPERFAMILY CheY-like 35 149 IPR011006 -
Vifa5g02791 170 Gene3D - 34 167 - -
Vifa5g02791 170 Pfam Response regulator receiver domain 37 132 IPR001789 GO:0000160
Vifa5g02791 170 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02791 Vifa-Chr5 923465696 923466296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02791 31 140 Response Regulator Gene Family AT3G04280 36.607 3.47e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa5g02791 Response_reg 1.7e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02791 - K02483 psat:127102670 214.927