Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02789 ATGCTGCCGTCGGTTATCTTCCTGTTTGCTCTACTCATCTTGCTTTTCTCTTCCCAAGGCTTTTTGTGTGCAGTGGAGTCGTTTTCTCTGAGTGTGCCATTTGCTTCATTGGAACAAACTAAATTGTGGTTAGTTAAGCCATCTTATGCACCATCTTATCCACCTGTGTCATCTCCATCTTACCAAGGTCCTAGTGCAACTCCGAAACACAAACATCATCATCATCGCCAGCGCCATCATAGCATGAGACCTTATGTAGGGGCTCCACCACCTTCCAAAGAGCAAGCTTGCGATCAAATATGTATGGATCCTCTCACATCAACTCCCTTTGGTTCACCCTGTGGTTGTGTATTTCCTATGAAAGTCAAACTTACACTGGATGTAGCTCCTTATGCTGTTTTTCCAGTAATGAGCGAGTTAGAGTATGAAGTTGCACTAGGCACATACTTAGAACAGAGTCAGGTGAAGATAATGGGTGCAACTGCTGACGTTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCATTGGGAGAGAAATTTGACAATACAACTGCAGCCCTGACATACGAGAGGTTATGGCATAAAAAAGTTCCTCTAAATAAGAGCCTTTTTGGTGATTATGCTGTCGTGTACATTACATATCCAGGAATTCCATCTTCACCACCATATGGAACTTCAATTGGGAGCGGTCCCAGTGAAAATGCTGATGGTAGTTTGCCAGTCAGCGCCAATTTTGCTAGCAAGAACCAGAAAACAAATCTTAGAACCATAATCATCATTGCTTTGTCTTCGTTTGTTCTCTTGCTGGTTTTGGTTGGAGCATTTTCTGTTACTCTGAAATGGAGGAAGAGTAGGAGACCATCAAGTGCAGTTGGCCCAGCATTTACATCTTCTCTGAACAAGAGATCTGGTTTGGGGTCTGTACTGTCAAGCAGTATTACGAGCTCGACATCAGTGTCTCTCATGTCTGCAATGCCTACTTCCATTCTCTCTGTTAAAACATTTTCACTGTCTGAGATTGAGAAAGCAACACATAAGTTTAATTCAAAGAGGGTATTAGGGGAAGGAGGATTTGGACGTGTGTATAGTGGTACATTAGAAGATGGGGCTGAAGTTGCAGTGAAGCTCCTTACAAAGGATAATCAAAATGGAGACCGTGAATTTATTGCAGAAGTTGAAATGTTAAGCCGTTTGCATCATCGCAATCTAGTGAAACTTATTGGTATTTGCATTGAAGGGCGCAGGCGTTGCCTGGTGTATGAGCTAGTTCCTAATGGCAGTGTTGAGTCCCATTTGCATGGTGATGACAAGACTAGGGGACCTCTAGATTGGGAAGCACGGATGAAAATTGCCCTTGGGGCTGCGAGAGGATTGGCTTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTCAAAGCTAGCAATGTGCTATTAGAAGAGGATTTTACCCCTAAAGTTTCTGATTTCGGTTTGGCACGAGAAGCAACTGAAGGCAGTAATCATATTTCTACCCGGGTGATGGGGACTTTTGGGTACGTTGCCCCAGAATATGCAATGACAGGCCATTTACTGGTTAAAAGTGATGTTTATAGTTATGGCGTTGTGCTTCTTGAACTTCTCACTGGCAGAAAACCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCGCGGGCACTGTTGACCAGTAGAGAAGGTTTAGAACAGCTAGTGGATCCATCTTTGGCTGGAAGTTACAACTTCGATGACATGGCAAAGGTAGCAGCTATTGCGTCAATGTGTGTTCACTCCGAGGTCACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAACTGATATACAATGACACAGATGAGACCTGTGGAGATTATTGTAGTCAGAAGGACTCCTCTGCTCAGGAATCTGATTTTAGAGGTGAGCTTGCCCCTTCTGATAGCAGTTGGTGGAATGGTGGAGGATTAACGCCTCGATTAACTTATGGACAAGCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTGGAAGATATGGAAAACAGACCGTTTTCAACTTCAAGCTTTAATGGAGATGAGATATCCTTACCAATTAGGCATGGAAATAGATCAGGTCCCTTAAGAACGATCCGAAGCAAGTTATCTTTATATAGATTTTCAGGAAGTCGGAGTGAGCATGGGGAGCGTTCTTCTAAGCGAAGTTGGGTATGA 2247 0.4344 MLPSVIFLFALLILLFSSQGFLCAVESFSLSVPFASLEQTKLWLVKPSYAPSYPPVSSPSYQGPSATPKHKHHHHRQRHHSMRPYVGAPPPSKEQACDQICMDPLTSTPFGSPCGCVFPMKVKLTLDVAPYAVFPVMSELEYEVALGTYLEQSQVKIMGATADVQNQGRTIVDINLVPLGEKFDNTTAALTYERLWHKKVPLNKSLFGDYAVVYITYPGIPSSPPYGTSIGSGPSENADGSLPVSANFASKNQKTNLRTIIIIALSSFVLLLVLVGAFSVTLKWRKSRRPSSAVGPAFTSSLNKRSGLGSVLSSSITSSTSVSLMSAMPTSILSVKTFSLSEIEKATHKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTKDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVPNGSVESHLHGDDKTRGPLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEEDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARALLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHSEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSAQESDFRGELAPSDSSWWNGGGLTPRLTYGQASSFITMEYSSGPLEDMENRPFSTSSFNGDEISLPIRHGNRSGPLRTIRSKLSLYRFSGSRSEHGERSSKRSWV 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02789 748 MobiDBLite consensus disorder prediction 67 82 - -
Vifa5g02789 748 Gene3D Transferase(Phosphotransferase) domain 1 426 647 - -
Vifa5g02789 748 PANTHER OS01G0750732 PROTEIN 89 644 - -
Vifa5g02789 748 SUPERFAMILY Protein kinase-like (PK-like) 328 625 IPR011009 -
Vifa5g02789 748 FunFam receptor-like serine/threonine-protein kinase ALE2 323 425 - -
Vifa5g02789 748 CDD STKc_IRAK 356 625 - -
Vifa5g02789 748 ProSiteProfiles Protein kinase domain profile. 350 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02789 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vifa5g02789 748 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Vifa5g02789 748 Gene3D Phosphorylase Kinase; domain 1 322 425 - -
Vifa5g02789 748 MobiDBLite consensus disorder prediction 56 89 - -
Vifa5g02789 748 Pfam Protein tyrosine and serine/threonine kinase 352 622 IPR001245 GO:0004672|GO:0006468
Vifa5g02789 748 FunFam Receptor-like serine/threonine-protein kinase ALE2 426 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02789 Vifa-Chr5 923427924 923432374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02789 100 631 Receptor kinase-like Gene Family AT5G56890 60.584 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa5g02789 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02789 - - gmx:100792309 1246.11