Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02788 ATGCTGCCGTCGGTTATCTTCCTGTTTGCTCTACTCATCTTGCTTTTCTCTTCCCAAGTGGAGTCGTTTTCTCTGAGTGTGCCATTTGCTTCATTGGAACAAACTAAATTGTGGTTAGTTAAGCCATCTTATGCACCATCTTATCCACCTGTGTCATCTCCATCTTACCAAGGTCCTAGTGCAACTCCGAAACACAAACATCATCATCATCGCCAGCGCCATCATAGCATGAGACCTTATGTAGGGGCTCCACCACCTTCCAAAGAGCAAGCTTGCGATCAAATATGTATGGATCCTCTCACATCAACTCCCTTTGGTTCACCCTGTGGTTGTGTATTTCCTATGAAAGTCAAACTTACACTGGATGTAGCTCCTTATGCTGTTTTTCCAGTAATGAGCGAGTTAGAGTATGAAGTTGCACTAGGCACATACTTAGAACAGAGTCAGGTGAAGATAATGGGTGCAACTGCTGACGTTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCATTGGGAGAGAAATTTGACAATACAACTGCAGCCCTGACATACGAGAGGTTATGGCATAAAAAAGTTCCTCTAAATAAGAGCCTTTTTGGTGATTATGCTGTCGTGTACATTACATATCCAGGAATTCCATCTTCACCACCATATGGAACTTCAATTGGGAGCGGTCCCAGTGAAAATGCTGATGGTAGTTTGCCAGTCAGCGCCAATTTTGCTAGCAAGAACCAGAAAACAAATCTTAGAACCATAATCATCATTGCTTTGTCTTCGTTTGTTCTCTTGCTGGTTTTGGTTGGAGCATTTTCTGTTACTCTGAAATGGAGGAAGAGTAGGAGACCATCAAGTGCAGTTGGCCCAGCATTTACATCTTCTCTGAACAAGAGATCTGGTTTGGGGTCTGTACTGTCAAGCAGTATTACGAGCTCGACATCAGTGTCTCTCATGTCTGCAATGCCTACTTCCATTCTCTCTGTTAAAACATTTTCACTGTCTGAGATTGAGAAAGCAACACATAAGTTTAATTCAAAGAGGGTATTAGGGGAAGGAGGATTTGGACGTGTGTATAGTGGTACATTAGAAGATGGGGCTGAAGTTGCAGTGAAGCTCCTTACAAAGGATAATCAAAATGGAGACCGTGAATTTATTGCAGAAGTTGAAATGTTAAGCCGTTTGCATCATCGCAATCTAGTGAAACTTATTGGTATTTGCATTGAAGGGCGCAGGCGTTGCCTGGTGTATGAGCTAGTTCCTAATGGCAGTGTTGAGTCCCATTTGCATGGTGATGACAAGACTAGGGGACCTCTAGATTGGGAAGCACGGATGAAAATTGCCCTTGGGGCTGCGAGAGGATTGGCTTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTCAAAGCTAGCAATGTGCTATTAGAAGAGGATTTTACCCCTAAAGTTTCTGATTTCGGTTTGGCACGAGAAGCAACTGAAGGCAGTAATCATATTTCTACCCGGGTGATGGGGACTTTTGGGTACGTTGCCCCAGAATATGCAATGACAGGCCATTTACTGGTTAAAAGTGATGTTTATAGTTATGGCGTTGTGCTTCTTGAACTTCTCACTGGCAGAAAACCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCGCGGGCACTGTTGACCAGTAGAGAAGGTTTAGAACAGCTAGTGGATCCATCTTTGGCTGGAAGTTACAACTTCGATGACATGGCAAAGGTAGCAGCTATTGCGTCAATGTGTGTTCACTCCGAGGTCACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAACTGATATACAATGACACAGATGAGACCTGTGGAGATTATTGTAGTCAGAAGGACTCCTCTGCTCAGGAATCTGATTTTAGAGGTGAGCTTGCCCCTTCTGATAGCAGTTGGTGGAATGGTGGAGGATTAACGCCTCGATTAACTTATGGACAAGCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTGGAAGATATGGAAAACAGACCGTTTTCAACTTCAAGCTTTAATGGAGATGAGATATCCTTACCAATTAGGCATGGAAATAGATCAGGTCCCTTAAGAACGATCCGAAGCAAGTTATCTTTATATAGATTTTCAGGAAGTCGGAGTGAGCATGGGGAGCGTTCTTCTAAGCGAAGTTGGGTATGA 2232 0.4341 MLPSVIFLFALLILLFSSQVESFSLSVPFASLEQTKLWLVKPSYAPSYPPVSSPSYQGPSATPKHKHHHHRQRHHSMRPYVGAPPPSKEQACDQICMDPLTSTPFGSPCGCVFPMKVKLTLDVAPYAVFPVMSELEYEVALGTYLEQSQVKIMGATADVQNQGRTIVDINLVPLGEKFDNTTAALTYERLWHKKVPLNKSLFGDYAVVYITYPGIPSSPPYGTSIGSGPSENADGSLPVSANFASKNQKTNLRTIIIIALSSFVLLLVLVGAFSVTLKWRKSRRPSSAVGPAFTSSLNKRSGLGSVLSSSITSSTSVSLMSAMPTSILSVKTFSLSEIEKATHKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTKDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVPNGSVESHLHGDDKTRGPLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEEDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARALLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHSEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSAQESDFRGELAPSDSSWWNGGGLTPRLTYGQASSFITMEYSSGPLEDMENRPFSTSSFNGDEISLPIRHGNRSGPLRTIRSKLSLYRFSGSRSEHGERSSKRSWV 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02788 743 FunFam Receptor-like serine/threonine-protein kinase ALE2 421 638 - -
Vifa5g02788 743 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02788 743 Pfam Protein tyrosine and serine/threonine kinase 347 617 IPR001245 GO:0004672|GO:0006468
Vifa5g02788 743 SUPERFAMILY Protein kinase-like (PK-like) 323 620 IPR011009 -
Vifa5g02788 743 MobiDBLite consensus disorder prediction 62 77 - -
Vifa5g02788 743 PANTHER OS01G0750732 PROTEIN 84 639 - -
Vifa5g02788 743 FunFam receptor-like serine/threonine-protein kinase ALE2 318 420 - -
Vifa5g02788 743 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vifa5g02788 743 Gene3D Phosphorylase Kinase; domain 1 317 420 - -
Vifa5g02788 743 Gene3D Transferase(Phosphotransferase) domain 1 421 642 - -
Vifa5g02788 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vifa5g02788 743 CDD STKc_IRAK 351 620 - -
Vifa5g02788 743 MobiDBLite consensus disorder prediction 51 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02788 Vifa-Chr5 923427924 923432374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02788 95 626 Receptor kinase-like Gene Family AT5G56890 60.584 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa5g02788 PK_Tyr_Ser-Thr 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02788 - - gmx:100792309 1250.73