Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02787 ATGCTTTTCGTCGGAATTTGTGTCGGCGACAGAGAATGCTGCCGTCGGTTATCTTCCTGTTTGCTCTACTCATCTTGCTTTTCTCTTCCCAAGTTCCCAAATTTATTTTCAGTGGACTGTGTTATGAGTTCACCCGTAGGCTTTTTGTGTGCAGTGGAGTCGTTTTCTCTGAGTGTGCCATTTGCTTCATTGGAACAAACTAAATTGTGGTTAGTTAAGCCATCTTATGCACCATCTTATCCACCTGTGTCATCTCCATCTTACCAAGGTCCTAGTGCAACTCCGAAACACAAACATCATCATCATCGCCAGCGCCATCATAGCATGAGACCTTATGTAGGGGCTCCACCACCTTCCAAAGAGCAAGCTTGCGATCAAATATGTATGGATCCTCTCACATCAACTCCCTTTGGTTCACCCTGTGGTTGTGTATTTCCTATGAAAGTCAAACTTACACTGGATGTAGCTCCTTATGCTGTTTTTCCAGTAATGAGCGAGTTAGAGTATGAAGTTGCACTAGGCACATACTTAGAACAGAGTCAGGTGAAGATAATGGGTGCAACTGCTGACGTTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCATTGGGAGAGAAATTTGACAATACAACTGCAGCCCTGACATACGAGAGGTTATGGCATAAAAAAGTTCCTCTAAATAAGAGCCTTTTTGGTGATTATGCTGTCGTGTACATTACATATCCAGGAATTCCATCTTCACCACCATATGGAACTTCAATTGGGAGCGGTCCCAGTGAAAATGCTGATGGTAGTTTGCCAGTCAGCGCCAATTTTGCTAGCAAGAACCAGAAAACAAATCTTAGAACCATAATCATCATTGCTTTGTCTTCGTTTGTTCTCTTGCTGGTTTTGGTTGGAGCATTTTCTGTTACTCTGAAATGGAGGAAGAGTAGGAGACCATCAAGTGCAGTTGGCCCAGCATTTACATCTTCTCTGAACAAGAGATCTGGTTTGGGGTCTGTACTGTCAAGCAGTATTACGAGCTCGACATCAGTGTCTCTCATGTCTGCAATGCCTACTTCCATTCTCTCTGTTAAAACATTTTCACTGTCTGAGATTGAGAAAGCAACACATAAGTTTAATTCAAAGAGGGTATTAGGGGAAGGAGGATTTGGACGTGTGTATAGTGGTACATTAGAAGATGGGGCTGAAGTTGCAGTGAAGCTCCTTACAAAGGATAATCAAAATGGAGACCGTGAATTTATTGCAGAAGTTGAAATGTTAAGCCGTTTGCATCATCGCAATCTAGTGAAACTTATTGGTATTTGCATTGAAGGGCGCAGGCGTTGCCTGGTGTATGAGCTAGTTCCTAATGGCAGTGTTGAGTCCCATTTGCATGGTGATGACAAGACTAGGGGACCTCTAGATTGGGAAGCACGGATGAAAATTGCCCTTGGGGCTGCGAGAGGATTGGCTTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTCAAAGCTAGCAATGTGCTATTAGAAGAGGATTTTACCCCTAAAGTTTCTGATTTCGGTTTGGCACGAGAAGCAACTGAAGGCAGTAATCATATTTCTACCCGGGTGATGGGGACTTTTGGGTACGTTGCCCCAGAATATGCAATGACAGGCCATTTACTGGTTAAAAGTGATGTTTATAGTTATGGCGTTGTGCTTCTTGAACTTCTCACTGGCAGAAAACCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCGCGGGCACTGTTGACCAGTAGAGAAGGTTTAGAACAGCTAGTGGATCCATCTTTGGCTGGAAGTTACAACTTCGATGACATGGCAAAGGTAGCAGCTATTGCGTCAATGTGTGTTCACTCCGAGGTCACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAACTGATATACAATGACACAGATGAGACCTGTGGAGATTATTGTAGTCAGAAGGACTCCTCTGCTCAGGAATCTGATTTTAGAGGTGAGCTTGCCCCTTCTGATAGCAGTTGGTGGAATGGTGGAGGATTAACGCCTCGATTAACTTATGGACAAGCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTGGAAGATATGGAAAACAGACCGTTTTCAACTTCAAGCTTTAATGGAGATGAGATATCCTTACCAATTAGGCATGGAAATAGATCAGGTCCCTTAAGAACGATCCGAAGCAAGTTATCTTTATATAGATTTTCAGGAAGTCGGAGTGAGCATGGGGAGCGTTCTTCTAAGCGAAGTTGGGTATGA 2328 0.4343 MLFVGICVGDRECCRRLSSCLLYSSCFSLPKFPNLFSVDCVMSSPVGFLCAVESFSLSVPFASLEQTKLWLVKPSYAPSYPPVSSPSYQGPSATPKHKHHHHRQRHHSMRPYVGAPPPSKEQACDQICMDPLTSTPFGSPCGCVFPMKVKLTLDVAPYAVFPVMSELEYEVALGTYLEQSQVKIMGATADVQNQGRTIVDINLVPLGEKFDNTTAALTYERLWHKKVPLNKSLFGDYAVVYITYPGIPSSPPYGTSIGSGPSENADGSLPVSANFASKNQKTNLRTIIIIALSSFVLLLVLVGAFSVTLKWRKSRRPSSAVGPAFTSSLNKRSGLGSVLSSSITSSTSVSLMSAMPTSILSVKTFSLSEIEKATHKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTKDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVPNGSVESHLHGDDKTRGPLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEEDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARALLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHSEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSAQESDFRGELAPSDSSWWNGGGLTPRLTYGQASSFITMEYSSGPLEDMENRPFSTSSFNGDEISLPIRHGNRSGPLRTIRSKLSLYRFSGSRSEHGERSSKRSWV 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02787 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Vifa5g02787 775 FunFam receptor-like serine/threonine-protein kinase ALE2 350 452 - -
Vifa5g02787 775 Pfam Protein tyrosine and serine/threonine kinase 379 649 IPR001245 GO:0004672|GO:0006468
Vifa5g02787 775 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Vifa5g02787 775 Gene3D Phosphorylase Kinase; domain 1 349 452 - -
Vifa5g02787 775 MobiDBLite consensus disorder prediction 94 109 - -
Vifa5g02787 775 ProSiteProfiles Protein kinase domain profile. 377 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02787 775 CDD STKc_IRAK 383 652 - -
Vifa5g02787 775 MobiDBLite consensus disorder prediction 83 115 - -
Vifa5g02787 775 Gene3D Transferase(Phosphotransferase) domain 1 453 674 - -
Vifa5g02787 775 PANTHER OS01G0750732 PROTEIN 116 671 - -
Vifa5g02787 775 SUPERFAMILY Protein kinase-like (PK-like) 355 652 IPR011009 -
Vifa5g02787 775 FunFam Receptor-like serine/threonine-protein kinase ALE2 453 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02787 Vifa-Chr5 923427889 923432374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02787 127 658 Receptor kinase-like Gene Family AT5G56890 60.584 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa5g02787 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02787 - - gmx:100792309 1243.41