Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02785 ATGTGTGATGTTACAAACGTAAAGGATATAGTTGAAGAACTACTGCAGTATCTCAGCACAGCAGAGTTTGCAATGCGTGAAGAGTTGTCACTTAAAGCGGCTATTCTAGCTGAGAAGTTTGCACCAGATCTTTCATGGTATGTTGACGTGATTCTTCAATTAATTGACAAGGCTGGGGATTTTGTTAGTGACGACATCTGGTTCCGAATGGTACAGTTTGTTACAAACAACGAAGACCTACAGCCTTATGCTGCAGCAAAAGCTCGAGAGTATCTTGACAAACCTGCCATACACGAGACAATGGTTAAGGTCAGTGCATATTTACTTGGGGAATTTGGACACCTTCTGGGGAGACGACCTGGGTGCAGCCCAAAGGAACTATTTAACATCATACATGAGAAGCTTCCTACTGTATCGATTCCTACTATATCTATACTTCTGTCAACATATGCTATAATTCTGATGCACTGTCAACCACCAGACCTTGAACTGCAGAATCAGATATGGGCAATATTTAAAAAAAATATGAAAGCCCAATTGAAGTTGAAATACAACAACGAAGTTGAATACCTTGCTTTGAGTAGAAAAGGTGAAGCCTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGAGACAGTCTGCATTAATTAAAAAGGCCGAAGATACTGAAGTTGATACTGCAGAAACAAGTGCCATTAAGTTGCGTGCTCAGCAACAATCTCAAACATCAAATGCTTTGGTTGTAACGGACCAAAGTCAAGCTAACGGAGCTCCTCCGCATGATGATGTTGCGGAGGCGCTTTCGAGGCAGTATTGGGAATACAATGTGCTTGACTATGAAGAGAAAGTAGTTGATGGTTTTTATGACATATATGGCCTCTATAATGACCCAGCAATGCAAGGAAAGATGCCATCTCTAGCTGATCTTGAAACAAACTCAGGTGGTTCTAGCTTTGAAGTAGTCATAGTTAATAGAACAATTGATCCTGCCCTGGACGAGTTGGTGCAAATTGCACACTGTATAGCATTGGACTGCCCTGTCTCTGAGATTGGTATTTTGGTGCAAAGGCTTGCTGAACTTGTTACTAGCCATATGGGCGGCCCTGTAAAAGATGCTAATATTATATTAACAAAATGGACAGAGAGAAGTACAGAATTAAGGACATCTCTTCACACAAGTGTATTACCTCTTGTGTCCTTAGATATTGGGCTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCAGTCAACATTCAGATGCCTTGTAGTCTGGTTAAAGGTAGTCATTACACTAGTGTTGAGGATGATGCTGTCAACATTATAAAATTAGATGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCGAAGGATAATGACCTTTAA 1431 0.4053 MCDVTNVKDIVEELLQYLSTAEFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRMVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYLLGEFGHLLGRRPGCSPKELFNIIHEKLPTVSIPTISILLSTYAIILMHCQPPDLELQNQIWAIFKKNMKAQLKLKYNNEVEYLALSRKGEALMDILAEMPKFPERQSALIKKAEDTEVDTAETSAIKLRAQQQSQTSNALVVTDQSQANGAPPHDDVAEALSRQYWEYNVLDYEEKVVDGFYDIYGLYNDPAMQGKMPSLADLETNSGGSSFEVVIVNRTIDPALDELVQIAHCIALDCPVSEIGILVQRLAELVTSHMGGPVKDANIILTKWTERSTELRTSLHTSVLPLVSLDIGLSRHRALLFKILAVNIQMPCSLVKGSHYTSVEDDAVNIIKLDDEREFLVDLMAAPGTLIPADILNAKDNDL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02785 476 Pfam Ethylene-responsive protein kinase Le-CTR1 266 464 - -
Vifa5g02785 476 Gene3D - 1 226 IPR011989 -
Vifa5g02785 476 SUPERFAMILY ARM repeat 1 164 IPR016024 -
Vifa5g02785 476 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 294 - -
Vifa5g02785 476 Pfam Adaptin N terminal region 1 151 IPR002553 GO:0006886|GO:0016192|GO:0030117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02785 Vifa-Chr5 922674630 922676157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02785 265 474 MAP Kinase Kinase Kinase AT1G08720 62.857 1.51e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02785 K11824 - gmx:100793930 447.973