Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02776 ATGGCTTCATTCACTTGCTCCGCCTCCGACCTCCACGCTATCCTCGGGACCAACTCAAACTCCACCGCCGCTGCAGAATACATATGCAACAACTTCAATGCTGTTGCAAAAAAATTCATAGACACCTCCTTCGCCGTCGACAACACCTACCTTCTCTTCTCCGCTTACCTAGTTTTCGCCATGCAACTCGGTTTCGCAATGCTCTGTGCCGGTTCCGTTCGTGCCAAAAACACCATGAACATTATGTTAACAAACGTTCTCGACGCCGCTACTGGTGGAATATTTTTTTATATTTTTGGTTTTGCCCTAGCTTACGGTACACCTTCAAATGGTTTCATCGGTAAACATTTCTTTGGGTTAAGTGATTTTCCTTCTGAGTCTTTTGATTACGGATTCTTTCTGTATCAATGGGCTTTCGCAATCGCTGCAGCAGGGATCACTAGTGGTTCTATTGCTGAAAGAACACAGTTTGTTTCTTATTTGATATATTCATCTTTTTTGACCGGTTTGGTTTATCCGATTGTCGCTCATTGGTTTTGGTCGAGTGATGGTTGGGGTAGTCCTGTTAGATCTGAGAATCTCTTGTTTGGTTCCGGTGTTATCGATTTCGCTGGTTGCGGTGTTGTTCATTTGGTTGGTGCTGTTGCTGGTTTTTGGGGTGCTTTCATTGAAGGACCAAGAATAGGTAGATTTGATCATGAGGGTAGGGTTGTTTCCATGAGAGGACATAGTGGTACTTTAGTTGTTATGGGAACATTCTTGTTATGGTTTGGTTGGTACGGTTTTAACCCTGGTTCTTTTCTTACCATCTTGAAAGCCTATGAGAGTGGTAATTCATATGGTCAATGGAGTGCTATTGGAAGAACAGCAGTGACAACAACGTTAGCTGGATGCACTGCAGCTTTAACGACGTTGTTTGGGAAACGCATGCAAACTGGTCATTGGAATGTTACTGATGTATGTAATGGTCTTCTCGGTGGTTTTGCTGCTATAACCGCAGGTTGTTCTGTTGTTGATCCATGGGCTGCTGTTATTTGTGGTTTTGTTGCTGCTTGGGTTTTGATTGGATGCAATATGTTGGCTGAGAACTTTCATTACGATGATCCTCTTGAAGCTGCTCAACTTCACGGTGGTTGTGGAACTTGGGGGATTATTTTTACTGCTTTGTTTGCTAAGAAACAGTATGTTATGGAAGTTTACGGCGGTTCGCCGGATAGACCTTATGGTTTGTTTTTGGGAGGTGGTGGAAGGTTGTTGGGTGCACATTGTGTTCAGATTGTGGCTATTGTTGTTTGGGTTAGTGTTACAATGGGGACTCTGTTTTTTATTCTTCATAAGATGAAATTGTTGAGGACTTCAGCTGAGGAAGAAATGGCTGGTTTGGATTTGACTAGCCATGGTGGAGTGGCTTATGAGTATCATGATCAACTTGAGTTACATTCCAAGAAACAACGTGCGTTTGAGATGTGA 1470 0.4306 MASFTCSASDLHAILGTNSNSTAAAEYICNNFNAVAKKFIDTSFAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFALAYGTPSNGFIGKHFFGLSDFPSESFDYGFFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSSDGWGSPVRSENLLFGSGVIDFAGCGVVHLVGAVAGFWGAFIEGPRIGRFDHEGRVVSMRGHSGTLVVMGTFLLWFGWYGFNPGSFLTILKAYESGNSYGQWSAIGRTAVTTTLAGCTAALTTLFGKRMQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAVICGFVAAWVLIGCNMLAENFHYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVMEVYGGSPDRPYGLFLGGGGRLLGAHCVQIVAIVVWVSVTMGTLFFILHKMKLLRTSAEEEMAGLDLTSHGGVAYEYHDQLELHSKKQRAFEM 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02776 489 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vifa5g02776 489 Gene3D Ammonium transporter AmtB like domains 25 487 IPR029020 -
Vifa5g02776 489 FunFam Ammonium transporter 28 486 - -
Vifa5g02776 489 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa5g02776 489 SUPERFAMILY Ammonium transporter 46 451 - -
Vifa5g02776 489 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vifa5g02776 489 PANTHER AMMONIUM TRANSPORTER 20 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02776 Vifa-Chr5 920070897 920072366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02776 5 484 Inorganic Solute Cotransporters AT4G13510 73.805 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02776 K03320 - twl:120007420 797.349