Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02775 ATGAAAGATCAAGCGAAAGGGAAAGGGCCAATGGAACCTCAAGACTCAGCTACTGAATTAACAACGCTTATTGTAGAAGATGATAAGCTTGTTAGAATGATTCATCAAGGTCTACTGAAAAGAGCTGGTGTGAAAAGTGAAGCAGTAAAGAATGGTAAAGAAGCCATAGATATTCATTGTAGTGGTCAAAGTTTTGACATTATTTTCATGGATAAAGATATGCCTATCATGAATGGGATTGAGGCAACCAAGAAGCTCCGATCAATGGGTATTGAAAGCATGATTGTTGGTGTGTCATCATGCAATAGAGAAGCAGACAAACAAGAATTTATTGAGGCAGGGCTAAATGACTATCAAGTGAAACCATTGAACCCTGATGTGCTTAGGTCGATTCTTGATGTTGTAAAAGCTAGCAAGTAG 420 0.3833 MKDQAKGKGPMEPQDSATELTTLIVEDDKLVRMIHQGLLKRAGVKSEAVKNGKEAIDIHCSGQSFDIIFMDKDMPIMNGIEATKKLRSMGIESMIVGVSSCNREADKQEFIEAGLNDYQVKPLNPDVLRSILDVVKASK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02775 139 CDD REC_hyHK_CKI1_RcsC-like 23 132 - -
Vifa5g02775 139 SUPERFAMILY CheY-like 20 135 IPR011006 -
Vifa5g02775 139 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Vifa5g02775 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 136 - -
Vifa5g02775 139 SMART REC_2 20 132 IPR001789 GO:0000160
Vifa5g02775 139 Gene3D - 1 138 - -
Vifa5g02775 139 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02775 Vifa-Chr5 920028344 920028944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02775 20 124 Response Regulator Gene Family AT3G04280 47.664 3.07e-27 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa5g02775 Response_reg 3.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02775 - - cam:101506170 176.407