Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02763 ATGGGTTTTGATGAAAACTCGGTTACATCGCTGTCTTCTTCAGGATCATGGACCAAAAATACCCTTTTCACTGAGATCCTTGGATTGCCAGTTTTGGAACTTGTGGCAATATCTACTAATTTGGTTGTTCTTGTTTTGTTTCTTTTGCGGCAGATTTTTTTATGTTTTGGTGGGAGAGTTTGGTTTTGTAAGGATCATAATAATAATAATAATAATAATATTAATAATGTTTCTGTTGTTGCCAATGGTGGTTCACTTCGTGGTAGAGAAACTTTTGATGTTACAATTGGGACATGGTTTAAGTTGTCGGTGCTGTCTTGTTTTTATGTTCTGTTGGTGCAAGTTTTTGTTTTGGGGTTTGATGTTGTTTCTTTGATTAAGGATGAATTTGTGGTTGTGGATTTGTCTCTTCTTTCTGCGCCGTTTGTTCAGGGTTTGGTTTGGATTGTATTGAGCTTCACTGCTTTGCATTGCAAGTACAAGGTGTCTCAGAAGTTTCCCATTTTGCTGAGGGTTTCTTGGTTTGTTTTGTTCGTTGTTTGTTTGTTTGGTTTATATGTTGATGGGAGAGGGTTTTGGTTGGATAGGTCCAAGTACGTGGCTTCTCATGTTTTGGCCAATTTCGCTGCTACCCCTGCTCTTGCCTTTCTGTGTTTTGTAGCGATTAGGGGTGTTTCTGGTGTACAAGTTTGTAGAAACGCGGACAATCAACAGCCATTACTTATTGATGAAGAAGAAGACGAAGAACCGGGTTGCGTTAAGGTTACTCCTTATAGTGATGCTGGACTTTATAGCTTGGCCACCATGTCTTGGCTTGACCCGATTCTTTCTATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTGTTGCGCCTAAAGATAAAGCCAAAACAAATTTTAAGATTTTGAATTCTAATTGGGAGAGATTGAAGGCCGAGAACTCGGAGACTCAGCCTTCATTAGCTTGGGCACTTCTCAAATCGTTCTGGAAGGAGGCGGCTGTTAATGCCATTTTTGCCGGTGTCACTACTCTTGTCTCGTATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGTATAGAGACTTACCCTCACGAGGGGTATGTCCTTGCAGGGATATTCTTTGTTGCAAAGCTTGTGGAAACCTTCGCAACGAGACAATGGTATCTAGGAGTGGACATCTTGGGGATGCATGTTAGGTCCGCTTTAACTGCGATGGTATATCAAAAAGGGCTTAAGTTATCGAGTATTGCCAGGCAAAGTCACACAAGTGGCGAGATTGTTAACTATATGGCTATTGATGTTCAGAGGGTAGGGGACTACGCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATAGCTTCCATTGCGACACTTGTTGCCACAATCATTTCCATTGCAGTCACTATTCCCGTGGCTCGGATCCAAGAAGACTATCAAGACAAATTAATGGCTGCCAAGGATGAAAGGATGAGAAAAACATCTGAGTGCTTAAGGAACATGAGGATTCTCAAGCTGCAGGCTTGGGAGGACAGATATCGAATAAGATTGGAGGAGATGCGTGGAGTAGAGTTCAAGTGGCTTAGGAAAGCCCTATATTCTCAGGCTTTCATAACTTTCATGTTCTGGAGCTCACCTATATTTGTTTCAGCCGTCACTTTCGCTACTTGCATAATGTTGGGCGGTCAGCTGACAGCAGGCGGTGTACTTTCAGCTCTAGCTACTTTTAGGATCCTCCAAGAACCTTTGAGGAATTTTCCAGACTTGGTATCTACAATGGCTCAGACAAAAGTTTCTATTGATCGACTAACTTGTTTTCTGCTGGAGGAAGAATTGCAGGAAGATGCAACTATTGTCTTGCCGCCGGGTGTTTCTAACATTGCCATAGAAATTAAGGATAGTGAATTCTCTTGGGACCCTTCTTCATCTTCCAGGCCTACTCTTTCAGAGATAAATATGAAAGTTGAAAAAGGGATGCGTGTGGCTGTTTGCGGTACGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGATTTCTGGTGAAGTCAGTGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATACTCTTTGGAAGTATAAAAGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGAACTTTTCTCGCATGGAGATCAGACAATTATTGGTGATAGAGGTATAAACCTGAGTGGGGGTCAGAAGCAACGGGTGCAGCTTGCCCGGGCACTATACCAAGATGCTGATGTTTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCACACACTGGATCAGAGTTGTTTAGGGAATATATATTGTTGGCACTGGAAAATAAAACTGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATCTGATACTGGTTCTCAAGGAAGGTAGCATCATACAAGCCGGAAAGTATGATGATCTTTTAAAAGCAGGAACAGATTTTAAAGCTCTAGTTTCAGCTCACCATGAAGCGATAGAGGCTATGGATATCCCTAATCACTCATCTGAAGATTCAGAGGAACATTTATCATTGGAGGAATCTGTTATGACAAGTAAGAAATCCATTTGTTCTGTGAATGATGTTGACAGTTTGACAAAGGAAATGCAAGAGGGGCCATCGTCTTCTGATCAAAAAACAAGTAAGGAGAAGAAGAAAGCTAAAAGATCGAGAAAAAAACAGCTTGTACAGGAAGAGGAGAGGGTTAGAGGTAGAGTTAGCATGAAGGTGTATCTTTCATACATGGCAGCGGCATATAAAGGTTCATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCGTGGGCTAACCCTCAAACAGAAGGAGACAAGCCCAAAGTAACTCCCATGAATCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGTTCATTGTTTATATTTGTTAGGGCTGTTCTAGTTGCTACGTTTGGTCTCGGAGCTGCACAGAAGCTGTTTTTGAAGATGCTTAGATGTGTTTTCCACGCACCGATGTATTTCTTTGATTCTACACCCGCTGGAAGGATCTTGAACAGGGTTTCTGTTGATCAGAGTGTTGTGGATCTTGACATCCCTTTTAGACTTGGTGGGTTTGCTGCTACAACAATACAGCTTATCGGTATTGTTGGTGTCATGACAGAAGTTACATGGCAAGTTTTGCTCTTAGTCATCCCAATGGCCATTGCTTGTTTATGGATGCAGAAATACTACATGGCTTCCTCTAGGGAACTGGTCCGTATTGTAAGCATCCAGAAATCACCAATTATAAATCTTTTTGGTGAATCAATTGCTGGAGCATCCACAATCAGGGGTTTCGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCCCGACCTTTCTTCTACAGTCTTGCTGCTATTGAGTGGCTCTGCCTGCGTATGGAGCTCCTGTCCACCTGTGTATTTTCTTTCTGCATGCTATTGCTCGTTAGCTTTCCCCATGGAAGTATTGACCCTAGCATGGCTGGACTTGCTGTGACATATGGTCTGAATTTAAATGCTCGGTTATCCCGTTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCAATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCCGCAGTAATTGAAGATTCCCGCCCTCCATCCTTATGGCCTCAAAATGGAACAATTGAAATAATTGATTTGAAGGTCCGTTACAAAGAAAATCTTCCTTTGGTGCTTCATGGAGTATCATGCACATTTCCTGGTGGGAAGAATATAGGAATAGTTGGACGCACTGGCAGTGGCAAATCTACGTTGATTCAAGCATTGTTTCGACTGATTGAACCAGCAGACGGAAGTATCCACATAGACAACATCAATATCTTAGAGATTGGTCTCCATGACCTCCGAAGTCATCTCAGTATCATACCACAGGATCCAACCTTGTTTGAAGGGACTATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGACATTTGGGAGGCATTAGATAAATCTCAACTTGGAGATATCATCCGCGAGAAAGGACAAAAGCTTGATACACCGGTTATAGAAAATGGAGACAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGCCGAGCTCTATTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTCGACACCGCCACTGATAATCTTATCCAGAAGATTATTCGAACAGAGTTCAAAGCCTGCACTGTGCTCACCATTGCACATCGTATCCCTACTGTCATTGACAGCGATCGAGTTCTGGTGCTCAGTGATGGTCGAGTTGCTGAATTTGACACTCCTTTACGACTATTAGAAGATAAGTCATCCATGTTTCTAAAGTTGGTGTCTGAGTATTCATCACGGTCGAGTGGCATACCAGAATTTTAG 4629 0.4182 MGFDENSVTSLSSSGSWTKNTLFTEILGLPVLELVAISTNLVVLVLFLLRQIFLCFGGRVWFCKDHNNNNNNNINNVSVVANGGSLRGRETFDVTIGTWFKLSVLSCFYVLLVQVFVLGFDVVSLIKDEFVVVDLSLLSAPFVQGLVWIVLSFTALHCKYKVSQKFPILLRVSWFVLFVVCLFGLYVDGRGFWLDRSKYVASHVLANFAATPALAFLCFVAIRGVSGVQVCRNADNQQPLLIDEEEDEEPGCVKVTPYSDAGLYSLATMSWLDPILSIGAKRPLELKDIPLVAPKDKAKTNFKILNSNWERLKAENSETQPSLAWALLKSFWKEAAVNAIFAGVTTLVSYVGPYMISYFVDYLSGIETYPHEGYVLAGIFFVAKLVETFATRQWYLGVDILGMHVRSALTAMVYQKGLKLSSIARQSHTSGEIVNYMAIDVQRVGDYAWYLHDMWMLPLQIVLALAILYKNVGIASIATLVATIISIAVTIPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEFKWLRKALYSQAFITFMFWSSPIFVSAVTFATCIMLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRLTCFLLEEELQEDATIVLPPGVSNIAIEIKDSEFSWDPSSSSRPTLSEINMKVEKGMRVAVCGTVGSGKSSFLSCILGEIPKISGEVSVCGSAAYVSQSAWIQSGTIEENILFGSIKDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTGSELFREYILLALENKTVIFVTHQVEFLPAADLILVLKEGSIIQAGKYDDLLKAGTDFKALVSAHHEAIEAMDIPNHSSEDSEEHLSLEESVMTSKKSICSVNDVDSLTKEMQEGPSSSDQKTSKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGSLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDKPKVTPMNLLLVYMALAFGSSLFIFVRAVLVATFGLGAAQKLFLKMLRCVFHAPMYFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFAATTIQLIGIVGVMTEVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFYSLAAIEWLCLRMELLSTCVFSFCMLLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAVIEDSRPPSLWPQNGTIEIIDLKVRYKENLPLVLHGVSCTFPGGKNIGIVGRTGSGKSTLIQALFRLIEPADGSIHIDNINILEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKDIWEALDKSQLGDIIREKGQKLDTPVIENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRTEFKACTVLTIAHRIPTVIDSDRVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVSEYSSRSSGIPEF 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02763 1542 CDD ABCC_MRP_domain2 1294 1514 - -
Vifa5g02763 1542 ProSitePatterns ABC transporters family signature. 776 790 IPR017871 GO:0005524|GO:0016887
Vifa5g02763 1542 FunFam ABC transporter C family member 5 635 883 - -
Vifa5g02763 1542 SMART AAA_5 678 859 IPR003593 GO:0016887
Vifa5g02763 1542 SMART AAA_5 1322 1507 IPR003593 GO:0016887
Vifa5g02763 1542 CDD ABC_6TM_ABCC_D1 337 624 IPR044746 GO:0140359
Vifa5g02763 1542 SUPERFAMILY ABC transporter transmembrane region 324 630 IPR036640 GO:0005524|GO:0016020
Vifa5g02763 1542 CDD ABCC_MRP_domain1 650 851 - -
Vifa5g02763 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 873 IPR027417 -
Vifa5g02763 1542 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 339 616 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g02763 1542 Pfam ABC transporter 669 803 IPR003439 GO:0005524
Vifa5g02763 1542 FunFam ABC transporter C family member 10 319 632 - -
Vifa5g02763 1542 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 979 1249 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g02763 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1286 1526 IPR027417 -
Vifa5g02763 1542 MobiDBLite consensus disorder prediction 920 951 - -
Vifa5g02763 1542 FunFam ABC transporter C family member 3 1279 1531 - -
Vifa5g02763 1542 Gene3D - 1279 1531 IPR027417 -
Vifa5g02763 1542 SUPERFAMILY ABC transporter transmembrane region 976 1276 IPR036640 GO:0005524|GO:0016020
Vifa5g02763 1542 Gene3D ABC transporter type 1, transmembrane domain 938 1277 IPR036640 GO:0005524|GO:0016020
Vifa5g02763 1542 Gene3D ABC transporter type 1, transmembrane domain 309 632 IPR036640 GO:0005524|GO:0016020
Vifa5g02763 1542 Gene3D - 633 895 IPR027417 -
Vifa5g02763 1542 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 258 1533 - -
Vifa5g02763 1542 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1296 1530 IPR003439 GO:0005524
Vifa5g02763 1542 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 874 IPR003439 GO:0005524
Vifa5g02763 1542 Pfam ABC transporter transmembrane region 979 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g02763 1542 Pfam ABC transporter transmembrane region 340 604 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g02763 1542 CDD ABC_6TM_ABCC_D2 977 1271 IPR044726 GO:0140359
Vifa5g02763 1542 FunFam ABC transporter C family member 5 940 1277 - -
Vifa5g02763 1542 Pfam ABC transporter 1313 1461 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02763 Vifa-Chr5 917639566 917645622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02763 650 867 Calmodulin-binding Proteins AT2G36910 31.197 4.08e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02763 - - gmx:100814850 2481.06