Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02754 ATGCAGATGAAAACACAGTTTTTCATTTTTTTCTGTTACATTATCTTCTTTTGTTTCTCTTACAGTTTTTCTGCTGCTTCGAACAATGAATTATCGGCTTTGCTTTCGATAAAATCGGGTCTTGTTGATCCCTTGAACACTCTTCATGATTGGAAGTTGGATTCACCTCATTGTAACTGGACTGGAATCAAATGCAACTCGGCAGGAACTGTGGAGAATCTCGACCTCTCTCGCAAGAATCTAAGTGGTATAGTATCCAATGATATACAAAGGCTTCAATCTCTTACTTCTCTTAACTTATGTTGCAATGCATTTTCATCAAAATTACCAAAATCTATATCCAATCTCACCAAATTGAACATTCTTGATGTAAGTCAGAATTTCTTCATTGGTGAGTTTCCATCAGGACTTGGAAAGGCGTCGAGATTAACAACGTTGAATGGTTCGAGCAATGAATTCTCAGGTACAATTCCTTTGGACCTTGGAAATGCATCTTTGTTAGAAATGCTTGATCTTAGAGGCAGTTTCTTTGAAGGTTCAATTCCGAAAACATTTGGAAACTTGCTTAAGTTGAAGTTTCTTGGTTTATCTGGGAATAATCTCACTGGAAAAGTTCCTGGTGAGCTTGGAAAACTTTCATCATTGGAGTATATGATTCTTGGATACAACGAATTCGAAGGTGAGATTCCATTAGAATTCAGAAATCTCACTAGTCTTAAGTATCTTGATTTAGCAGTTTCAAATCTTGGTGGTGAGATTCCAGATGAATTTGGAAATCTCAAGCTATTGAATACACTTTTCTTATACAACAACAAATTTGAAGGAAGAATTCCATCACAAATTGGTAACATGATTTCTTTGCAGTTTTTCGATCTTTCTGATAACATTTTGTCAGGAAAAATACCAGATGAAATAGGTCTGCTGAAGAATTTGAAGCTTTTGAACTTCATGGGAAACCAGTTATCTGGTTTTGTTCCTTCTGGCATTGGGAATTTGCCTCAGTTAGAGGTTCTTGAGCTATGGAACAATTCATTATCAGGTCCATTACCAAGCAACCTCGGCGAAAATTCATCGTTGCAATGGTTGGATGTATCGTCCAATTCGATCTCTGGAGAGATTCCCGAAACTCTTTGCAGCAAAGGAAATCTCACCAAGCTAATACTTTTCAACAATGCTTTCTCTGGTTCAATTCCATTGAGCCTATCAAAATGTTCTTCGCTTGTTCGTGTTCGAATTCAGAACAATTTTCTTTCTGGATCAGTTCCTGTAGGTCTTGGCAAGCTTGAGAAGCTTCAAAGGTTAGAATTAGCTAACAATAGTCTCACTGGTGAAATTCCTGATGATATTCCTTCTTCAACATCTCTTTCTTTCATTGATCTCTCAAGAAACAAACTCCATTCTTCTCTACCTTCTACTATTCTCTCCATTCCAAATCTTCAAGTTTTCATGCTCTCCCACAACAACTTACAAGGTAAAATACCAAGTCATTTTCAGGATTCTCCTTCACTTACTGTTATTGATCTCTCGTCGAATCGTTTATCTGGAGCCATTCCAGAAAGCATAGGTTCATGTCAAAAACTAGTAAATTTGAACCTGCAAAATAACCTTTTGATTGGTGAAATCCCAAAAGCACTAGCTAACATGCCTACAATGGCAATGCTTGATCTTTCCAACAACTCGTTAACCGGTCATATACCTGAGAACTTTGGTTTATCACCAGCTTTGGAAGCATTTAATGTTTCATACAACAAGCTTGAAGGTTCTGTGCCAGAAAATGGTATGCTAAGAACTATAAACCCGAACAATCTTGTCGGTAATGCTGGCCTATGCGGTGGAATCCTCCCTTCATGTGACCAAAACTCGGCGTACTCTTCAAGGTATGGAAGTTCACATGCAAAGCATATTATCATAGGATGGATCATTGGAATATCATCAATTCTAGCCATTGGAATTACAATTTTGCTAGCAAGATCTTTATATGTAAGGTGGTACACCGGCGGATTTTGCTTCAAAGAAAGATTTTATAAAGGTAACAAAGGGTGGCCATGGCGATTAATAGCATTTCAGAGAATTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATCGGAATGGGAGCTACCGGCGTTGTTTACAAAGCCGAGGTACCGCAATCCAATACAATCATAGCAGTGAAGAAGTTGTGGAAATCAGGAAATGATGTTGAAGTAGGAAGAGGCAGCGATGAGCTTGTTGGAGAGGTGAACCTCTTAGGGAAACTAAGACACAGGAACATTGTTAGACTATTAGGATTTCTTCACAATGACACTGATTTGATGATAGTTTATGAATTTATGCATAATGGAAACCTAGGAGATGCCTTGCATGGTAAGCAAGCTGTTAGACAGCTTGTTGATTGGGTTTCAAGATATAACATAGCTCTAGGAGTTGCTCAAGGACTTGCTTACCTTCACCACGACTGCTATCCGCCGGTTATCCATCGCGACATTAAGTCGAATAATATACTGCTTGATGCAAATCTTGAAGCAAGGATAGCAGATTTTGGGTTAGCCAAGATGATGATCCGGAAGAACGAAACCATCTCCATGGTTGCTGGATCCTATGGCTACATTGCTCCTGAATATGGATATGCATTGAAGGTGGATGAAAAGATTGATGTATACAGTTATGGAGTAGTTTTATTGGAGCTTGTGACAGGAAAGAGGCCATTAGATGCGGAATTCGGAGAGAGTGTAGACATTGTAGAGTGGATTAGAAGGAAGATCAGAGACAAGAAATCTCTAGAAGAAGCATTAGATCCAAGTGTAGGAAACTGCAGGCATGTTATAGAAGAAATGCTTTTAGTTTTAAGAATAGCAGTTGTTTGCACTGCTAAGCATCCTAAAGACAGACCAAGCATGAAGGATGTGATAATGATGCTTGGAGAAGCAAAGCCTAGAAGAAAGATTAGTGGAAACAATGAAACATCTTTAGAAGCTAACAACAATAACAAGGAGATGTCAGTGTTTAGTACATCACCAGTTAGTGGTCTTCTCTAG 3054 0.3847 MQMKTQFFIFFCYIIFFCFSYSFSAASNNELSALLSIKSGLVDPLNTLHDWKLDSPHCNWTGIKCNSAGTVENLDLSRKNLSGIVSNDIQRLQSLTSLNLCCNAFSSKLPKSISNLTKLNILDVSQNFFIGEFPSGLGKASRLTTLNGSSNEFSGTIPLDLGNASLLEMLDLRGSFFEGSIPKTFGNLLKLKFLGLSGNNLTGKVPGELGKLSSLEYMILGYNEFEGEIPLEFRNLTSLKYLDLAVSNLGGEIPDEFGNLKLLNTLFLYNNKFEGRIPSQIGNMISLQFFDLSDNILSGKIPDEIGLLKNLKLLNFMGNQLSGFVPSGIGNLPQLEVLELWNNSLSGPLPSNLGENSSLQWLDVSSNSISGEIPETLCSKGNLTKLILFNNAFSGSIPLSLSKCSSLVRVRIQNNFLSGSVPVGLGKLEKLQRLELANNSLTGEIPDDIPSSTSLSFIDLSRNKLHSSLPSTILSIPNLQVFMLSHNNLQGKIPSHFQDSPSLTVIDLSSNRLSGAIPESIGSCQKLVNLNLQNNLLIGEIPKALANMPTMAMLDLSNNSLTGHIPENFGLSPALEAFNVSYNKLEGSVPENGMLRTINPNNLVGNAGLCGGILPSCDQNSAYSSRYGSSHAKHIIIGWIIGISSILAIGITILLARSLYVRWYTGGFCFKERFYKGNKGWPWRLIAFQRIGFTSTDILACIKETNVIGMGATGVVYKAEVPQSNTIIAVKKLWKSGNDVEVGRGSDELVGEVNLLGKLRHRNIVRLLGFLHNDTDLMIVYEFMHNGNLGDALHGKQAVRQLVDWVSRYNIALGVAQGLAYLHHDCYPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETISMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELVTGKRPLDAEFGESVDIVEWIRRKIRDKKSLEEALDPSVGNCRHVIEEMLLVLRIAVVCTAKHPKDRPSMKDVIMMLGEAKPRRKISGNNETSLEANNNNKEMSVFSTSPVSGLL 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02754 1017 SUPERFAMILY L domain-like 51 345 - -
Vifa5g02754 1017 MobiDBLite consensus disorder prediction 989 1017 - -
Vifa5g02754 1017 Pfam Leucine rich repeat 167 224 IPR001611 GO:0005515
Vifa5g02754 1017 Pfam Leucine rich repeat 477 537 IPR001611 GO:0005515
Vifa5g02754 1017 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vifa5g02754 1017 Gene3D Phosphorylase Kinase; domain 1 694 783 - -
Vifa5g02754 1017 Gene3D Ribonuclease Inhibitor 207 303 IPR032675 -
Vifa5g02754 1017 Gene3D Ribonuclease Inhibitor 141 206 IPR032675 -
Vifa5g02754 1017 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Vifa5g02754 1017 FunFam MDIS1-interacting receptor like kinase 1 702 787 - -
Vifa5g02754 1017 ProSitePatterns Protein kinases ATP-binding region signature. 708 732 IPR017441 GO:0005524
Vifa5g02754 1017 Gene3D Ribonuclease Inhibitor 308 625 IPR032675 -
Vifa5g02754 1017 Pfam Protein kinase domain 704 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02754 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 176 276 - -
Vifa5g02754 1017 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 232 980 - -
Vifa5g02754 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 359 621 - -
Vifa5g02754 1017 SMART serkin_6 702 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02754 1017 SMART LRR_typ_2 357 380 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 501 524 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 548 571 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 260 284 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 92 116 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 308 331 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 332 356 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 188 212 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 428 452 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 236 259 IPR003591 -
Vifa5g02754 1017 SMART LRR_typ_2 476 499 IPR003591 -
Vifa5g02754 1017 SUPERFAMILY RNI-like 253 594 - -
Vifa5g02754 1017 Gene3D Transferase(Phosphotransferase) domain 1 784 1006 - -
Vifa5g02754 1017 FunFam MDIS1-interacting receptor like kinase 1 788 998 - -
Vifa5g02754 1017 SUPERFAMILY Protein kinase-like (PK-like) 699 979 IPR011009 -
Vifa5g02754 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vifa5g02754 1017 MobiDBLite consensus disorder prediction 987 1017 - -
Vifa5g02754 1017 ProSiteProfiles Protein kinase domain profile. 702 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02754 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 27 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02754 Vifa-Chr5 914723493 914726721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02754 1 1017 Receptor kinase-like Gene Family AT1G08590 58.142 0.0 1156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g02754 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02754 - - gmx:100811284 1603.57