Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02752 ATGGAAGCTCGTCCTGCTTTCTCAATTGAAAGATCAAGTGCCCGGCAGCTGAATAACATAGGAATGTCTGGAGCTCTTCCTTCATCGATGTCCATCCATCCAACACCTCTAGACGAGACGTACCCCAGATTATCTGATTCGCAGCAGGCTTTTGTGGAAAAAGATCTTAAGACAAGAACTTTTAATCATGCAGGTCATATAAGTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCGACAGACCTTCATCACTCATCTCTTTCACCTCATGAAAAACCCTCTAGAAATGCTCATTTTATTGTACAGCCATTGAGTAGCGTAGCTCCAGTGCCATTACCGTATTCTTCAAATAATGGACCAGTACCTTCTACCACATCAACACATTATTCCAATGGAAACAGTGCTCCGTGGCATGCAGATTCCCTGCCTAGCTTTCTTGATTTCTCAGCGAATGCCTCAATTAATAATAATTCATTAGAGAGCAGTGACTGCAATATTATGGCTACTGAGGAGTTTTCTAAGCGGAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGACGATACTTTGACTTCTAATTGGAATGATATTCTTGCTGATAATATTCAAGATCTCGAGCCAAAGGTTACGGCGGTGGATCCCATTGCAAAGTCATCTTCACAATTTTCGGCAGGACACCAATCCCAAGGCAATCAACAACTTCCAGCTCTATCCGGAGAAAACCATGTTGGTACTGCTCCATCTTCCTCAGCAAATTCTGCATCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCAGCCAACTTGGTGGTAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGACTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGCTGGAGAGAAAAAACTAAGCCCCATTGAAGATATTTCATCTCTAGATTTAAAAACTGGTATTGAGATCACAGAAGCTCTACGACTGCAAATGGAGGTTCAGAAACGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAAGGCAGGTACCTCCAGATGATGTTCGAGAAACAATGCAAATCTGGTGTTGAACCTTTTAAGGCATCATCGTCGGCCACTGAGAATCCATCTGGAGTGTCTCCTGACACCATAAAAGATCCTATTACAAAAAATGAATCGGAAGCATCTAAATCGGACCTTTGCAGGCCAGGATCTGATCAAGCTAATGGCAGCACCACAGTTGAGGATAGCTCGCCGGAAGCAGGTGGGAAGCAGGATACCTTCAAAGCCCAAGCTTCTGATGATCTTAAGCATAATGATAATGAAGACAGCCATCAAGCCTCTAAGCGGCCAAGGACAGAAGAATAA 1473 0.4392 MEARPAFSIERSSARQLNNIGMSGALPSSMSIHPTPLDETYPRLSDSQQAFVEKDLKTRTFNHAGHISSSGAVGHMFSSSPGYSTDLHHSSLSPHEKPSRNAHFIVQPLSSVAPVPLPYSSNNGPVPSTTSTHYSNGNSAPWHADSLPSFLDFSANASINNNSLESSDCNIMATEEFSKRNDWQEWADQLISDDDTLTSNWNDILADNIQDLEPKVTAVDPIAKSSSQFSAGHQSQGNQQLPALSGENHVGTAPSSSANSASAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSATENPSGVSPDTIKDPITKNESEASKSDLCRPGSDQANGSTTVEDSSPEAGGKQDTFKAQASDDLKHNDNEDSHQASKRPRTEE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02752 490 FunFam Myb family transcription factor 263 321 - -
Vifa5g02752 490 SUPERFAMILY Homeodomain-like 262 318 IPR009057 -
Vifa5g02752 490 Pfam MYB-CC type transfactor, LHEQLE motif 349 396 IPR025756 -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 465 490 - -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 401 490 - -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 401 421 - -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 225 264 - -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 435 455 - -
Vifa5g02752 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 321 IPR017930 -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 225 267 - -
Vifa5g02752 490 Pfam Myb-like DNA-binding domain 266 317 IPR001005 -
Vifa5g02752 490 MobiDBLite consensus disorder prediction 20 39 - -
Vifa5g02752 490 Coils Coil 352 372 - -
Vifa5g02752 490 NCBIfam myb-like DNA-binding domain, SHAQKYF class 264 318 IPR006447 GO:0003677
Vifa5g02752 490 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 236 484 IPR044848 GO:0003700
Vifa5g02752 490 Gene3D - 263 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02752 Vifa-Chr5 913826786 913832200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02752 1 406 G2-like Transcription Factor Family AT4G28610 49.517 2.05e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g02752 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02752 - - gmx:100810560 731.48