Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02751 ATGGAAGCTCGTCCTGCTTTCTCAATTGAAAGATCAAGTGCCCGGCAGCTGAATAACATAGGAATGTCTGGAGCTCTTCCTTCATCGATGTCCATCCATCCAACACCTCTAGACGAGACGTACCCCAGATTATCTGATTCGCAGCAGGCTTTTGTGGAAAAAGATCTTAAGACAAGAACTTTTAATCATGCAGGTCATATAAGTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCGACAGACCTTCATCACTCATCTCTTTCACCTCATGAAAAACCCTCTAGAAATGCTCATTTTATTGTACAGCCATTGAGTAGCGTAGCTCCAGTGCCATTACCGTATTCTTCAAATAATGGACCAGTACCTTCTACCACATCAACACATTATTCCAATGGAAACAGTGCTCCGTGGCATGCAGATTCCCTGCCTAGCTTTCTTGATTTCTCAGCGAATGCCTCAATTAATAATAATTCATTAGAGAGCAGTGACTGCAATATTATGGCTACTGAGGAGTTTTCTAAGCGGAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGACGATACTTTGACTTCTAATTGGAATGATATTCTTGCTGATAATATTCAAGATCTCGAGCCAAAGGCGGTGGATCCCATTGCAAAGTCATCTTCACAATTTTCGGCAGGACACCAATCCCAAGGCAATCAACAACTTCCAGCTCTATCCGGAGAAAACCATGTTGGTACTGCTCCATCTTCCTCAGCAAATTCTGCATCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCAGCCAACTTGGTGGTAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGACTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGCTGGAGAGAAAAAACTAAGCCCCATTGAAGATATTTCATCTCTAGATTTAAAAACTGGTATTGAGATCACAGAAGCTCTACGACTGCAAATGGAGGTTCAGAAACGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAAGGCAGGTACCTCCAGATGATGTTCGAGAAACAATGCAAATCTGGTGTTGAACCTTTTAAGGCATCATCGTCGGCCACTGAGAATCCATCTGGAGTGTCTCCTGACACCATAAAAGATCCTATTACAAAAAATGAATCGGAAGCATCTAAATCGGACCTTTGCAGGCCAGGATCTGATCAAGCTAATGGCAGCACCACAGTTGAGGATAGCTCGCCGGAAGCAGGTGGGAAGCAGGATACCTTCAAAGCCCAAGCTTCTGATGATCTTAAGCATAATGATAATGAAGACAGCCATCAAGCCTCTAAGCGGCCAAGGACAGAAGAATAA 1467 0.439 MEARPAFSIERSSARQLNNIGMSGALPSSMSIHPTPLDETYPRLSDSQQAFVEKDLKTRTFNHAGHISSSGAVGHMFSSSPGYSTDLHHSSLSPHEKPSRNAHFIVQPLSSVAPVPLPYSSNNGPVPSTTSTHYSNGNSAPWHADSLPSFLDFSANASINNNSLESSDCNIMATEEFSKRNDWQEWADQLISDDDTLTSNWNDILADNIQDLEPKAVDPIAKSSSQFSAGHQSQGNQQLPALSGENHVGTAPSSSANSASAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSATENPSGVSPDTIKDPITKNESEASKSDLCRPGSDQANGSTTVEDSSPEAGGKQDTFKAQASDDLKHNDNEDSHQASKRPRTEE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02751 488 MobiDBLite consensus disorder prediction 223 262 - -
Vifa5g02751 488 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Vifa5g02751 488 MobiDBLite consensus disorder prediction 433 453 - -
Vifa5g02751 488 MobiDBLite consensus disorder prediction 223 265 - -
Vifa5g02751 488 Coils Coil 350 370 - -
Vifa5g02751 488 FunFam Myb family transcription factor 261 319 - -
Vifa5g02751 488 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 234 482 IPR044848 GO:0003700
Vifa5g02751 488 MobiDBLite consensus disorder prediction 463 488 - -
Vifa5g02751 488 MobiDBLite consensus disorder prediction 399 488 - -
Vifa5g02751 488 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Vifa5g02751 488 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Vifa5g02751 488 MobiDBLite consensus disorder prediction 399 419 - -
Vifa5g02751 488 Gene3D - 261 320 - -
Vifa5g02751 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Vifa5g02751 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Vifa5g02751 488 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02751 Vifa-Chr5 913826786 913832200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02751 1 404 G2-like Transcription Factor Family AT4G28610 49.757 3.54e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g02751 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02751 - - gmx:100810560 731.865