Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02749 ATGGCACCATCCAATCCCAAAGTTATAGCGGCGTTCCGCGCAATGACCAACCTTGGCATTCATGAATCCAAAGTGAAACCAGTGTTGAAGAAACTGATTAAATTGTATGAAGGAAACTGGGCGCTTATTGAAGAAGAGAATTATAGGGCTCTTGTCGATGCTATTTTCGAAGACGAAGATAATCAGGAAGGGGGGGTTGAGGCTGAAGCTCCTGCGCCAGTAGAGCAAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGATGGTCAATTTTTACTTCTTCCGACTAGTGGCGGTAGCCCAAGTCTAGCCGTCTCTCCAGTGAAATCAGGCCTTCCGACTAGTGGCGGTAGCCCAACATCACCTGCCTCCTCTCCATTGAAATCACGCGGTAGCCCAAGATCACCTGCCTCCTCTCCATTGAAATCACGCGGTAGCCCAACTTCACCTGCCTCCTCTCCATTGAAATCACCTAAACCAAGACCTGGCACAGTAACTGAAAGTGGTTCCGAACTGCAGCCTCAAAGCCCATCAGTGTTATCCAGAGGAAATGCCGCTGCTGACAAGGGAAAGAATCCTGTCTCACCTCTAGATACTTCAAGAAGGAGAAAATCTATATCCGACAGAAGTCCATCTAAAGAACAGGCTGTTGAACCAGGAACCTCTCCGTCTCCAAAAACCAAGACACCCCATCCTTACCCTTTTATCATCCCCAAGGCAGAGCCTATTGATGAAGAGGCAGATTATGAGGTTCCCATTTCAATGGTTTTTCCTGAACCTCTAAGTCCCGGAGAGCAAGGTAACAACGACGCAGTGGCATCACAATGCAGGAACGGAAATGTTGAAGATGAAGCCTCGGTTGCATCTCAGGTTCCGGTTTCTCTACCCTCCCCAAGTGACCCAGATGACATAACAAAGGGAGAAGAAAAAGTGAAAATTCCATGGGTGAATAATTCTGCTAATGATATCCCGCCTTTGTTTCACTACATGCCCCAAAACACGGTGTTCCAAGATGCATATGTTAATATTTCTCTATCGCGTATTGGGAACAAAGATTGTTGTTCTACTTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGTAAATAAAACTGGAGGGGATTTTGCTTATACTGCACAAGGCATAGTAAAGGAAGAGTTCTTGGAAGAGTGTATTGCCAACAGCCGCACTCAAAGTTTTACCTATTGCAAAAAATGCCCACTTGAAACAGCAAAGAATGATGGCTGTTTAGAACCATGTAAAGGACATTTGAAGAGGAAATTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATCGGATTGTCCAGCGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCGGATGGAAAAGGGTGGGGTCTTCGCACCTTAGAGGAACTTCCAAAAGGGGCATTTGTATGCGAGTTTGTTGGAGAAATTCTGACAGTCAAAGAGCTGCATGAGAGGAACAAGGCTAGAAAATATACGTTACCAGTTTTATTGGATGCAGAATGGGGCTCAGGTGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCTGCATCATATGGAAATGCTGCTCGGTTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCGGTTGAAATTGAGAGTCCATCTCATCACTACTATCATTTTGCGTTCTTCACATCCAGAGAAATCAAAGCACAGGAAGAGTTGACCTGGGATTACGGCATCGACTTTGATGGCGATGATCAGTCACTCGAGCTGTTTAAGTGCAAATGTGGCAGTAGATTCTGCAGGAATATTAAGCGAACAAATAGAACAGTTAGATCGTTTGCTGCTGCGTGA 1875 0.4459 MAPSNPKVIAAFRAMTNLGIHESKVKPVLKKLIKLYEGNWALIEEENYRALVDAIFEDEDNQEGGVEAEAPAPVEQVRPLKRLRLRGQDGQFLLLPTSGGSPSLAVSPVKSGLPTSGGSPTSPASSPLKSRGSPRSPASSPLKSRGSPTSPASSPLKSPKPRPGTVTESGSELQPQSPSVLSRGNAAADKGKNPVSPLDTSRRRKSISDRSPSKEQAVEPGTSPSPKTKTPHPYPFIIPKAEPIDEEADYEVPISMVFPEPLSPGEQGNNDAVASQCRNGNVEDEASVASQVPVSLPSPSDPDDITKGEEKVKIPWVNNSANDIPPLFHYMPQNTVFQDAYVNISLSRIGNKDCCSTCMGNCVLSSKPCSCVNKTGGDFAYTAQGIVKEEFLEECIANSRTQSFTYCKKCPLETAKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGITCNLQVFLTSDGKGWGLRTLEELPKGAFVCEFVGEILTVKELHERNKARKYTLPVLLDAEWGSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEIESPSHHYYHFAFFTSREIKAQEELTWDYGIDFDGDDQSLELFKCKCGSRFCRNIKRTNRTVRSFAAA 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02749 624 SMART preset_2 302 441 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g02749 624 MobiDBLite consensus disorder prediction 93 237 - -
Vifa5g02749 624 ProSiteProfiles Pre-SET domain profile. 354 454 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g02749 624 CDD SET_SETDB-like 326 586 - -
Vifa5g02749 624 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 623 IPR025776 -
Vifa5g02749 624 Pfam SET domain 469 586 IPR001214 GO:0005515
Vifa5g02749 624 SMART set_7 457 592 IPR001214 GO:0005515
Vifa5g02749 624 MobiDBLite consensus disorder prediction 94 153 - -
Vifa5g02749 624 ProSiteProfiles SET domain profile. 457 586 IPR001214 GO:0005515
Vifa5g02749 624 Pfam Pre-SET motif 305 449 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa5g02749 624 MobiDBLite consensus disorder prediction 284 307 - -
Vifa5g02749 624 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 617 - -
Vifa5g02749 624 SUPERFAMILY SET domain 312 609 IPR046341 -
Vifa5g02749 624 Gene3D SET domain 305 611 IPR046341 -
Vifa5g02749 624 MobiDBLite consensus disorder prediction 164 183 - -
Vifa5g02749 624 MobiDBLite consensus disorder prediction 196 212 - -
Vifa5g02749 624 Pfam Ubiquitin-binding WIYLD domain 7 61 IPR018848 -
Vifa5g02749 624 Gene3D - 1 61 IPR043017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02749 Vifa-Chr5 912844700 912848904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02749 304 609 Su(var)3-9 homologs AT1G73100 29.052 5.37e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g02749 Pre-SET 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02749 - - psat:127125996 999.193