Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02738 ATGTTAGATATCAGCAGCAACAATCTTTCAGGAGAAATTCCCCAAAATCTTCAAAAGTTAGGATCATTGGAGATTCTCAATGTATCACACAACAATCTATCCGGAACAATCCCACAATCCTTTTCAAATATGGGCAGCCTTCAATCTGTGGACTTCTCTTACAACCACTTGTCAGGTTTGATACCAACTGGTGGTGTTTTCCAGACAGAAAGTGCTGAAGCTTTTGTTGGGAACTCAGGTTTGTGTGGTGATGTAAAGGGATTAACATGTGCCAAAAACCATTCTGGAGGGTCCAACAAAAAGGTACTTCTTGGTGTTACTATATCAGTTGGTGGAGTATTTTTTATAGGGATGATTGGTGTTGGAATCCTGCTATTTCAAAGGAAAGCCAAAAAACTTAGTGAAGAATCCAAAAGCATTGAAGATAATGATCAATCTATTTGCTTGATATGGGGAAGAGATGGAAAGTTCACATTTTCTGATCTTGTGAAAGCAACCAATGACTTCAATGAAAAGTATTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCAGAACTACCTACAGGTCAAGTTGTTGCTGTTAAAAGACTCAACATATCAGATTCTGATGACATTCCAAAAGAGAACCGCATGAGCTTCATAAATGAGATAAGATCACTTACAGGAGTGAGGCACAGGAATATAATAAAGCTATATGGTTTTTGTTCAATGAGGGGAGACATGTTCTTGGTTTATGAACATGTAGAGAGAGGAAGTCTGGGGAAAATGTTGTATGGAGAAGAAGGAATATCGGAGCTAAGTTGGCGTACAAGGGTGAGAATTGTGCAAGGATTAGCACATGCAATTGCTTACCTACATAGTGATTGTTCTCCACCAATCGTGCACAGAGATATCACACCGAACAATATACTGCTGGATTCAGATTTTGTGCCTCATCTTGCAGATTTTGGCACTGCAAAGCTGCTAAGCTCTAACAATTCAACCTGGACTTCAGTTGCAGGAACCTATGGCTACATGGCTCCAGAGCTAGCACAAACCATGAGGGTGACTGAAAAATGTGACGTGTATAGTTTTGGTGTGGTGGTGTTAGAGATATTGATGGGAACACACCCCGGAGACTTCTTGAATATCCTATACTCAAACAAGTCTTTGGCATTAATGGAAGTGCTTGTGAAGGATGTTGTAGACCAGCAGCTTCCACCTCCTACAGACGAATTAGGCGAAACAATAATGTTTACAATGAGAGTAGCTTTGGCATGCACAAGTGCTGCTCCAGAGTCTAGACCCATGATGCGTTCTGTTGCGCAAGAACTATCAGCTACTGCACAGGCTCGTCATTCTCAGCCATTTGATATGATGACCGTAGGCAAGCTTACAGGATTACAAAATTAG 1398 0.4077 MLDISSNNLSGEIPQNLQKLGSLEILNVSHNNLSGTIPQSFSNMGSLQSVDFSYNHLSGLIPTGGVFQTESAEAFVGNSGLCGDVKGLTCAKNHSGGSNKKVLLGVTISVGGVFFIGMIGVGILLFQRKAKKLSEESKSIEDNDQSICLIWGRDGKFTFSDLVKATNDFNEKYCIGKGGFGSVYRAELPTGQVVAVKRLNISDSDDIPKENRMSFINEIRSLTGVRHRNIIKLYGFCSMRGDMFLVYEHVERGSLGKMLYGEEGISELSWRTRVRIVQGLAHAIAYLHSDCSPPIVHRDITPNNILLDSDFVPHLADFGTAKLLSSNNSTWTSVAGTYGYMAPELAQTMRVTEKCDVYSFGVVVLEILMGTHPGDFLNILYSNKSLALMEVLVKDVVDQQLPPPTDELGETIMFTMRVALACTSAAPESRPMMRSVAQELSATAQARHSQPFDMMTVGKLTGLQN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02738 465 SUPERFAMILY Protein kinase-like (PK-like) 151 440 IPR011009 -
Vifa5g02738 465 Gene3D Phosphorylase Kinase; domain 1 128 249 - -
Vifa5g02738 465 Pfam Protein kinase domain 171 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02738 465 SUPERFAMILY L domain-like 2 63 - -
Vifa5g02738 465 CDD STKc_IRAK 175 440 - -
Vifa5g02738 465 Gene3D Transferase(Phosphotransferase) domain 1 250 457 - -
Vifa5g02738 465 Gene3D Ribonuclease Inhibitor 1 93 IPR032675 -
Vifa5g02738 465 Pfam Leucine rich repeat 2 57 IPR001611 GO:0005515
Vifa5g02738 465 FunFam Leucine-rich repeat receptor protein kinase MSP1 131 249 - -
Vifa5g02738 465 PANTHER LEUCINE RICH REPEAT KINASE 2 2 446 - -
Vifa5g02738 465 ProSiteProfiles Protein kinase domain profile. 169 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02738 465 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Vifa5g02738 465 FunFam Leucine-rich repeat receptor-like protein kinase 1 92 - -
Vifa5g02738 465 ProSitePatterns Tyrosine protein kinases specific active-site signature. 295 307 IPR008266 GO:0004672|GO:0006468
Vifa5g02738 465 FunFam MDIS1-interacting receptor like kinase 2 250 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02738 Vifa-Chr5 909666064 909667648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02738 4 64 Receptor kinase-like Gene Family AT4G08850 34.426 9.21e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa5g02738 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02738 - - gmx:100809137 686.026