Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02736 ATGTACTCTCTTACAAACAGAAATGAAACATTTGAGAAATTGGGAGCCATTGGAACATTACTGAACCTGTTGGTGTATCTTACAACTGTATTCAACCTAAACAACGTCACAGCTACAAACATCATCAACATCTTCAATGGCAGTACCAACGTTGCTACCTTGCTTGGTGCTTTCGTCTCTGACACATATTTCGGCCGTTACAACACATTAGGATTCTGCATCATCACTTCCTTTCTGGGATTACTTGCAATACAACTTACAGCTGTATTCAAGAATCTGCATCCACCATCCTGTGCAAAGGAAAGTAGCACATGCATTGGACCAACAGCGGGACAAATGATGTTTCTATTTTCTGGGTTTTGCTTACTCTTGATAGGTGCTGCAGGGATTCGACCGTGTAATTTAGCATTCGGTGTTGATCAATTCAATCCAAAAACAGAATCAGGAAAGAAAGGAATCAACAGTTTCTTCAATTGGTATTATTTCACCTTCACTTTTGCTCAGATGATTTCTTTGTCATTGATTGTGTATGTACAATCAAGTGTGAGCTGTGCAATTGGTCTTGGAATTCCTGCTGCATTGATGTTGTTAGCTTGTGTGTTATTTTTCATGGGTGATAAATTGTATGTTAAAGTAAAACCAAGTGGCAGTCCCATCAAAAGTATTGTACAAGTTTTAGTGGTTGCAGTCAAGAAAAGGAGAGTTAAACTACCTGCTCAGCATCCAATGCTTTCCCTCTTTGATTATGTGCCATCCAAGTGCGATTATCCAAAGCTTCCTCACACATATCAATTCAGACGTCTGCTTTCGTATCCATCAGGTGCCAAACATGTCAAATGTTGGATACACACCAAGTGTGGCTTTCCAAGCATGGAAGAAAGCATATTAGATCAGTTGAATGAAGAGTTGAAAGAGAAAATAAAGAATGATGTTTATGACATGGCTCCTTGGAAATCTCCAAGTCCAGATGGATACCGTGTAGGCTTTTATCAAAACTCTTGA 1002 0.3922 MYSLTNRNETFEKLGAIGTLLNLLVYLTTVFNLNNVTATNIINIFNGSTNVATLLGAFVSDTYFGRYNTLGFCIITSFLGLLAIQLTAVFKNLHPPSCAKESSTCIGPTAGQMMFLFSGFCLLLIGAAGIRPCNLAFGVDQFNPKTESGKKGINSFFNWYYFTFTFAQMISLSLIVYVQSSVSCAIGLGIPAALMLLACVLFFMGDKLYVKVKPSGSPIKSIVQVLVVAVKKRRVKLPAQHPMLSLFDYVPSKCDYPKLPHTYQFRRLLSYPSGAKHVKCWIHTKCGFPSMEESILDQLNEELKEKIKNDVYDMAPWKSPSPDGYRVGFYQNS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02736 333 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 8 265 - -
Vifa5g02736 333 Gene3D MFS general substrate transporter like domains 3 284 IPR036259 -
Vifa5g02736 333 SUPERFAMILY MFS general substrate transporter 17 206 IPR036259 -
Vifa5g02736 333 Pfam POT family 73 235 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vifa5g02736 333 NCBIfam zinc finger domain, LSD1 subclass 266 280 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02736 Vifa-Chr5 909313533 909315083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02736 8 268 Organic Solute Cotransporters AT5G62680 61.450 4.66e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa5g02736 PTR2 3.4e-28 CL0015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02736 K26552 - gmx:100814170 400.208