Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02730 ATGGAGGATTCTGGAAAATCCATCAACAACATCGCGGGTAAAAGTAGTAGTAAATTATTGAATCCATGGATGCTCCACTTTCAGAAACTTGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGATTGTTCAAGAATCCGGTTTTGCTTCCATGCAACCACTTGTTCTGCAGTTCTTGTATGTCTGATAGTTCAACGATTGGTTCTGAATGTGCTCTATGTAACACCAAATACGCTCAAATAGATTTAAGGCATGTTCCTTTTGTGGAAAATATGGTAACTATTTATAAGAATTTGGATGCGACCTTTTGTGCTAATGCATTTCAGCAACGCTCTTCTGATGATATGATGGTTTTGGAGCGGTGCCAAACTCTTCAGAATTCAATTTGTAGTAATAAGAATACTGATAAGGTTATGCTGAATTCATGTATGTCCAATGAGGTTGGGGCTGCTAACCGCATTGTGGAGAAAAGTGATTCAATGAGATGTTCTCAGAAAGATATTGGGGATCGTGTTGAAATGGATTTGAATCAAGCGACAGAATCAGCACCAGATAGCCCTCCATTTTGTGATAAAGGTTCTGATAACTGCTGCAGTTATCAAGACAGTGAGCAACCACCCAATGTTGTGAAATCTGAATATTCATCATTAAAAAGCACAACCACTGGAAAAAGTGATTTGAAAGAAAGAATGGCTCAGTTCAGGTCTGAAAGTTCTGCCTCTGAAAATGAGGGTCTTAGGGGAGATACGAAGAAACACAAAAATCTTCCTAATGGTGATGCAATTATTCAACAGAGCACCTCATATCATAATAAGCTTGTAGATTCCCGCCGTGACTTGGACCTTAAATCTGAAAAGGTCCCTGGTGCAATCATATCTTCAAATTCTCCAAATGACTCGTGCCCAAGTACAAGCATGTGCTCTTTTTGCCAGTCCTTTGATATTTCAGAGGCTACTGGGCCTATGCTGCATTATGAAGAAGGGATTTTAGTTACAGGAGATGCTGCAATGCAACCAAATGTTGTGCATGTGCATAAAGTTTGTATTGACTGGGCCCCACAGGTGTACTTTGTTGGTGAAACTGTTAAGAATTTGAAGAAAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACCCTATGTGGTCTAAAGGGAGCTGCTCTTGGTTGCTTTGTCAAATCATGTAAAAGAACTTATCATGTCCCTTGTGCAATGAACATCTCTACCTGCCGCTGGGATCATGTGAATTATCTCTTGCTATGTCCCTCTCATTCAAATGTCAAATTTCCAAGTGAGAACTCCAGTCACAAGAAAAAGTCAACTCAGAAGCATCCTGTTTCTTCTCAACTGCCACTTCAACAGCCAAACAACCTGTTGGGAGGTTTAAGGAATGATGATAAAAAAATTGTTTTCTGTGGATCTGCCCTATCAAATGAAGAAAAGGTGCTTTTGATTAATTTCGCAAGCAAGGTTGGTGCTACAGTGACCAAGTGCTGGACCTCAAATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGGGCATGCTCCAGGACAATGAAAGTTTTGAGGGCAATTCTAAATGGACAATGGATCCTAAAAGTAGACTGGATAAGAGCATGCATGGAAGAGACTAATCTAGTTGATGAAGAATGTTATGAAATTGATCTTGACAATCAAGGGTGCCGTGGTGGCCCAAAAGCTGGCAGACTTATGGCACTGGCCAAGGAGCCAAAGATATTCAGTGGCTTAAAGTTCTATTTTTCTGGTGACTACGATTTGAGTTTTAAGAAATATCTTGAAGACTTAGTTGAAGTGGGAGAAGGTGCTGTTTTGAAAAGCAAAGGCGAATTGGAAGTTAGAATAGATGCAAAAGTGCTGGTTGTTTATAATATTGATCCCCCACAAGGATGTAAGCTAGGAGATGAAGTTTCCATTCTTTGGCAGAGACTGAGTGAAGCAGAGGATCTAGCTGCTGTCAATACCTGTTACCAAGTCATTGGTCACACTTGGATTCTGGAGTCAATTGCTGCATGTAAACTGCATCCTTTTATTAGTTAA 2055 0.4058 MEDSGKSINNIAGKSSSKLLNPWMLHFQKLALELKCPLCLRLFKNPVLLPCNHLFCSSCMSDSSTIGSECALCNTKYAQIDLRHVPFVENMVTIYKNLDATFCANAFQQRSSDDMMVLERCQTLQNSICSNKNTDKVMLNSCMSNEVGAANRIVEKSDSMRCSQKDIGDRVEMDLNQATESAPDSPPFCDKGSDNCCSYQDSEQPPNVVKSEYSSLKSTTTGKSDLKERMAQFRSESSASENEGLRGDTKKHKNLPNGDAIIQQSTSYHNKLVDSRRDLDLKSEKVPGAIISSNSPNDSCPSTSMCSFCQSFDISEATGPMLHYEEGILVTGDAAMQPNVVHVHKVCIDWAPQVYFVGETVKNLKKEVARGAKLKCTLCGLKGAALGCFVKSCKRTYHVPCAMNISTCRWDHVNYLLLCPSHSNVKFPSENSSHKKKSTQKHPVSSQLPLQQPNNLLGGLRNDDKKIVFCGSALSNEEKVLLINFASKVGATVTKCWTSNVTHVIAATDANGACSRTMKVLRAILNGQWILKVDWIRACMEETNLVDEECYEIDLDNQGCRGGPKAGRLMALAKEPKIFSGLKFYFSGDYDLSFKKYLEDLVEVGEGAVLKSKGELEVRIDAKVLVVYNIDPPQGCKLGDEVSILWQRLSEAEDLAAVNTCYQVIGHTWILESIAACKLHPFIS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02730 684 ProSiteProfiles Extended PHD (ePHD) domain profile. 303 423 IPR034732 -
Vifa5g02730 684 MobiDBLite consensus disorder prediction 199 221 - -
Vifa5g02730 684 FunFam Breast cancer associated RING 1 300 425 - -
Vifa5g02730 684 Gene3D BRCT domain 576 677 IPR036420 -
Vifa5g02730 684 Gene3D BRCT domain 463 569 IPR036420 -
Vifa5g02730 684 SUPERFAMILY BRCT domain 578 681 IPR036420 -
Vifa5g02730 684 MobiDBLite consensus disorder prediction 241 255 - -
Vifa5g02730 684 Pfam Zinc finger, C3HC4 type (RING finger) 33 78 - -
Vifa5g02730 684 Coils Coil 223 243 - -
Vifa5g02730 684 FunFam Breast cancer type 1 susceptibility protein homolog 464 570 - -
Vifa5g02730 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 425 IPR013083 -
Vifa5g02730 684 SMART ring_2 376 422 IPR001841 -
Vifa5g02730 684 SMART ring_2 36 73 IPR001841 -
Vifa5g02730 684 Pfam BRCA1 C Terminus (BRCT) domain 464 540 IPR001357 -
Vifa5g02730 684 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Vifa5g02730 684 Pfam BRCT domain, a BRCA1 C-terminus domain 576 681 IPR001357 -
Vifa5g02730 684 SUPERFAMILY BRCT domain 467 554 IPR036420 -
Vifa5g02730 684 MobiDBLite consensus disorder prediction 199 258 - -
Vifa5g02730 684 ProSiteProfiles BRCT domain profile. 574 684 IPR001357 -
Vifa5g02730 684 SUPERFAMILY RING/U-box 33 96 - -
Vifa5g02730 684 ProSiteProfiles Zinc finger RING-type profile. 36 74 IPR001841 -
Vifa5g02730 684 CDD BRCT_Bard1_rpt1 467 546 - -
Vifa5g02730 684 Pfam PHD-like zinc-binding domain 344 423 - -
Vifa5g02730 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 109 IPR013083 -
Vifa5g02730 684 SMART BRCT_7 453 543 IPR001357 -
Vifa5g02730 684 SMART BRCT_7 576 677 IPR001357 -
Vifa5g02730 684 ProSiteProfiles BRCT domain profile. 467 553 IPR001357 -
Vifa5g02730 684 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 17 294 IPR031099 GO:0006281|GO:0006974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02730 Vifa-Chr5 908244378 908250006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02730 497 610 Core DNA Replication Machinery Family AT4G02110 29.412 2.77e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02730 K10683 - gmx:100784883 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02730 5 908244378 908250006 Vifa5g02730 5 908244378 908250006 ECH