Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02720 ATGGGGAGTAGGGTTAGAAATCTGAGGAAGAGATTGTTGAAGATAATGAAGTGTCTTTGTTCAGGGGAGGTTGTGAAAGAGGATGATACAATTGTTCCTGATTCGTCGGAATGTCTTGCGACGGAGGATTATTATTCTGCGACGGCTAGTGGGATTTCTGGACAAGATGGACAAGTTGAGAGGAGGCGGGATTCTGGTAATATAGAGCAAGCCGAATCGTCTTTGCGTGAGAGTGGTATATTGAACTATGAGGAAGCTAGAGCTTTGTTAGGGAGATATGAATATCAGGAAGGAAACATAGAAGCTGCTTTGCATGTCTTTGAAGGCATAAACATAGCTGCTGTGACTCCCAAGATAAACAATTTTCTTGCCAAAAGTAGAGAGCGCCCCAAGAGACGCTCTCGGGATCACACAACTGCATCAATTTCTATACATACAGCTGGACTACTACTAGAAGCCATCTTGCTAAAAACAAAATGTTTGCAGGTTCTTGGAAGGTTTCAAGAATCTGCCCAAACATGCAAAATTATTCTGGACATGATTGAGTCTTCTTTACCTGAAGGCTTGCCCAGAAACTTTGGTGCCGAATGTAAATTGCACGAGACTTTAAGTAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCCGATTGTACACGTGAAGTTATTTTGTCATACCGGCGTGCACTCCTTCATCGATGGAATCTTGATGCAGAGACCACAGCAAAAATTCAGAAAGAATTTGCCATTTTTCTTCTATATAGTGGAGGGGAAGAAATTCTCCCAGATCTTCGTTCCCATATCGACAGTTCATTTGTACCAAGAAATAACACTGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAATATCTCTAAATAAAATTGAATGGGATCCTTCAATTTTGGAGCACCTTTCATTTGCTCTATCGGTTTCCGGGAATTTGACAGCTTTAGCCAACCTATGGGAAGAATTACTCCCTGGTACTATCAATCGAAGAGAAAGATACCATGCCCTTGCTCTTTGTTATTCCGGGGCAGATAAGGATTTGGTGGCCTTCAATCTTCTTAAAAAGTTGTTGAGTAACGGAGAGGATCCAAAACATGTTCCTGCTTTGTTAATGGCTTCTAAGATATGCTGTGAGAACCCTGCCCTTGCAAAAGATGGGATTAGCTATGCTAGCAGAGTGCGAGAGAACTTGGGTGAAAGATGTAATCAGTTGGAAAGTCTCGCCAATTGCTTACTCGGTGTTTCACTTTCAACATGCTCAAAATTGGCTGTTTCTAATTCTGAGATGTCTGAGAAACAATCTGAAGCACTCCATTCATTAGAAATTGCAAGCACTATGACCAGAATGAACGACCCTCTTGTACTTTACTATTTAAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATTCTGCACTTCATTACGCAAAGCGCTTTCTAAAATTAGAAGCCGGGTCTAATATTAAAGGCTGGTTGTTGTTAGCCCGAATATTATCAGCACAAAAACAGTTTTTGGATGCTGAATCTATTGTTGATGCTGCTTTGGATCGGACTGGAATATGGGATCAAGGATTTTTGTTGCGAACCAAAGCTAAACTGCAAATTGCACAGGGGAAGTTGCCAAGTGCCATTGAAACATATACTCAGCTTCTTGCTATTCTTCTGGTTCAGAGAAAAACTTTTGGTTCAAGAAACAAGCTATACAAGGATAACAGAGATCATGCTAGGAACTTGGAAGTTGAAATATGGCATGATCTTGCTTATATATACATAAGCCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGCCATGTAATAGGTACTATGCTTGAAGCAAAGGGTCTTCACAAAGAGGCTCTAAAAGCTTTTGTTGACGCATTGACCCTTGATCCCGAACATGTCCCTAGCTTGATCTCAACCGGTGTGGTTCTTAGACAGTTTGGTACTGAATTAAACCCTGATGTTAGAAGCTTTCTGATGGGTGCACTAAGGCTCGACAGAACTAATGCTTCAGCTTGGTATAATCTTGGCATTCTTCACAAGGCCGAAGGTAGAATATTAGAAGCTGCAGAATGTTTTCAGGCTGCAAACTCTCTTGAAGAATCAGAACCAGTGGAACCTTTCAGATGA 2187 0.4102 MGSRVRNLRKRLLKIMKCLCSGEVVKEDDTIVPDSSECLATEDYYSATASGISGQDGQVERRRDSGNIEQAESSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGINIAAVTPKINNFLAKSRERPKRRSRDHTTASISIHTAGLLLEAILLKTKCLQVLGRFQESAQTCKIILDMIESSLPEGLPRNFGAECKLHETLSKAVELLPELWKLADCTREVILSYRRALLHRWNLDAETTAKIQKEFAIFLLYSGGEEILPDLRSHIDSSFVPRNNTEEAILLLMILLRKISLNKIEWDPSILEHLSFALSVSGNLTALANLWEELLPGTINRRERYHALALCYSGADKDLVAFNLLKKLLSNGEDPKHVPALLMASKICCENPALAKDGISYASRVRENLGERCNQLESLANCLLGVSLSTCSKLAVSNSEMSEKQSEALHSLEIASTMTRMNDPLVLYYLSLECAEQRKLDSALHYAKRFLKLEAGSNIKGWLLLARILSAQKQFLDAESIVDAALDRTGIWDQGFLLRTKAKLQIAQGKLPSAIETYTQLLAILLVQRKTFGSRNKLYKDNRDHARNLEVEIWHDLAYIYISLSRWHDAEVCLSKSKAIKLYSASRCHVIGTMLEAKGLHKEALKAFVDALTLDPEHVPSLISTGVVLRQFGTELNPDVRSFLMGALRLDRTNASAWYNLGILHKAEGRILEAAECFQAANSLEESEPVEPFR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02720 728 SUPERFAMILY TPR-like 440 558 IPR011990 GO:0005515
Vifa5g02720 728 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
Vifa5g02720 728 Pfam Tetratricopeptide repeat 620 652 IPR019734 GO:0005515
Vifa5g02720 728 Pfam Tetratricopeptide repeat 689 720 IPR019734 GO:0005515
Vifa5g02720 728 Gene3D Tetratricopeptide repeat domain 55 579 IPR011990 GO:0005515
Vifa5g02720 728 SMART tpr_5 619 652 IPR019734 GO:0005515
Vifa5g02720 728 SMART tpr_5 458 491 IPR019734 GO:0005515
Vifa5g02720 728 SMART tpr_5 151 184 IPR019734 GO:0005515
Vifa5g02720 728 SMART tpr_5 493 526 IPR019734 GO:0005515
Vifa5g02720 728 SMART tpr_5 529 562 IPR019734 GO:0005515
Vifa5g02720 728 SMART tpr_5 585 618 IPR019734 GO:0005515
Vifa5g02720 728 SMART tpr_5 689 722 IPR019734 GO:0005515
Vifa5g02720 728 Gene3D Tetratricopeptide repeat domain 675 726 IPR011990 GO:0005515
Vifa5g02720 728 ProSiteProfiles TPR repeat profile. 689 722 IPR019734 GO:0005515
Vifa5g02720 728 PANTHER PROTEIN NPG1 16 728 IPR043376 -
Vifa5g02720 728 MobiDBLite consensus disorder prediction 50 70 - -
Vifa5g02720 728 SUPERFAMILY TPR-like 531 719 IPR011990 GO:0005515
Vifa5g02720 728 Gene3D Tetratricopeptide repeat domain 580 671 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02720 Vifa-Chr5 905471664 905475703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02720 5 728 Calmodulin-binding Proteins AT4G28600 54.852 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02720 K21843 - gmx:100809498 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02720 5 905471664 905475703 Vifa5g02720 5 905471664 905475703 ECH
Vifa3g01269 3 325231477 325234602 Vifa5g02720 5 905471664 905475703 PCT