Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02712 ATGGATCATGTGATTGCTGGAAAGTTTAAACTTGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTTTATATAGGTGTTAATGTACAAACTGGTGAGGAGGTAGCTGTCAAGCTGGAGCCTGTGAAGACCAAGCATCCACAGCTTCATTATGAATCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGGTGCCTCACCTGAAGTGGTTTGGAGTTGAGGGAGACTACAATGTGATGGCGATTGACCTTCTTGGACCCAGTCTGGAAGATCTGTTCAATTATTGTAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAATCAGGTCTACATCATTGACTATGGCCTTGCCAAAAAATTCAGAGATCTTCAGACTCATAAGCACATACCATACAGAGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTTCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCGGGTACCAAAAAACAAAAATATGATAGAATCAGTGAGAAGAAGATGACAACTTCCATAGAGGTGCTTTGCAAATCATATCCCTCAGAGTTTGGATCATACTTCCACTACTGCCGATCTTTGCGGTTTGAAGACAAGCCTGACTACTCCTATTTAAAGAGGCTTTTTCGAGATCTATTTATTCGAGAAGGCTATCAATTTGACTATATTTTTGACTGGACTATATTGAAGTATCCACAGATTAGTGGAAGCTCTAGAGGGAGGCATGACAGTGGCAAGGTGGCTATGAATGCAGGGCCATCTGTACAGAGGCCAGAAAAGATCTCAGTTGGGAAAGAGCTTCGAGAGAGATTCACCGGGGCTGTTGAAGCATTCTCGCGGAGGAACCCAACAAGTTCTAGTCCTCGACGTGATCATTCTAAACATAGGGGTTTTGAGGATGTAGCAGCCATACCCAAGGATGCGCATCATGATCAAGACAAGGGACGCAATTCTGGCCGATATGGCAGCAGTTCAAGAAGACCTATAATCTCATCAACATCCAAGCCAAGTTCTTCAGGTGACCATACTGACAGTCGTACTGGCCGTCTGACCTCATCTGGTAGCCGCCCATCAACCGCACATAGAACTCAACCTATGTACGAGACCAAACAACCAACCTACACGCGACCAGGATCTTCTAGAGGCAACCGCGATGATCCTTTGCGGAGTTTTGAACTCCTCTCTATCAGGAAGTAA 1389 0.4377 MDHVIAGKFKLGRKIGSGSFGELYIGVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMTTSIEVLCKSYPSEFGSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTILKYPQISGSSRGRHDSGKVAMNAGPSVQRPEKISVGKELRERFTGAVEAFSRRNPTSSSPRRDHSKHRGFEDVAAIPKDAHHDQDKGRNSGRYGSSSRRPIISSTSKPSSSGDHTDSRTGRLTSSGSRPSTAHRTQPMYETKQPTYTRPGSSRGNRDDPLRSFELLSIRK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02712 462 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vifa5g02712 462 MobiDBLite consensus disorder prediction 382 444 - -
Vifa5g02712 462 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02712 462 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa5g02712 462 PANTHER CASEIN KINASE-RELATED 9 382 - -
Vifa5g02712 462 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02712 462 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Vifa5g02712 462 MobiDBLite consensus disorder prediction 300 462 - -
Vifa5g02712 462 FunFam Putative Casein kinase I 1 85 - -
Vifa5g02712 462 MobiDBLite consensus disorder prediction 325 339 - -
Vifa5g02712 462 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa5g02712 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa5g02712 462 MobiDBLite consensus disorder prediction 349 381 - -
Vifa5g02712 462 FunFam Casein kinase 1-like protein 1 330 - -
Vifa5g02712 462 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02712 462 MobiDBLite consensus disorder prediction 446 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02712 Vifa-Chr5 903858127 903863646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02712 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 3.70e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa5g02712 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02712 K08960 - cam:101493293 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02712 5 903858127 903863646 Vifa5g02712 5 903858127 903863646 ECH
Vifa5g02712 5 903858127 903863646 Vifa3g01277 3 328044648 328048929 PCT