Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02711 ATGGATTCGGCTAGGAGTTGGTTATCCAAGTTTCAACCGCGAGATAGACTGAGAGCTTCAACGAGGAAGAAGGACGACGTTATGGGCGGAGGCGAGGATTCTGATGCGTCTGTTGATGATGAGAGTCTTTCCAATGTTACAAAGCAGAAGGTAGCGGCTGCGAAACAGTATATTGAGAACCATTACAAGGAACAGATGAAGAGTCTTCAAGAGAGAAAGGAGCGGCGGACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTATCCGAGGAAGATCAAAATAACCTACTTAAATTTCTAGAGAAGAAGGAGACTGAATATATGCGTCTTCAGAGGCATAAAATGGGTGTTGAGGATTTTGAGATGTTGACTATGATTGGAAAAGGCGCGTTTGGGGAGGTTAGAGTCTGTAGGGAAAAGACTACTGATCATGTATTTGCAATGAAAAAGCTAAAGAAATCAGAAATGCTTCGGAGAGGCCAGGTTGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTGGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTTCAGGATGATGATTATTTATATCTTATAATGGAGTATCTACCGGGAGGGGATATGATGACTCTACTTATGAGAAAGGATACGTTGACCGAAGATGAAGCCCGATTTTATGTAGGAGAAACAGTTCTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAATTTATTACTTGATAAATACGGGCACTTGAAACTATCAGATTTTGGATTATGTAAACCGTTAGACTGTAGTACACTAGAAGAATCAGATTTTTCTAATTGTCAGAATGCAAATGGAACTGGACAGAGTGATGATCGTGCAGGTCCGAAACGTACACAACAAGAACAGTTGGAAAACTGGCAGAAAAACAGGAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCTGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGCAGGAAGATAGTAAACTGGAAGTCTCACTTGAAATTTCCTGAAGAAGCAAGGCTATCTCGGGAGGCCATAGATCTTATAAGTAAGCTGTTGTGTAATGTGAGCCAGAGACTGGGGTCAAATGGTGCAGTTGAAATAAAGTCTCATTCATTCTTCGAAGGTGTTCAATGGGAAAAGTTGTATCAAATGGAAGCTGCATTTACTCCTGAAGTCAATGATGAGTTAGATACTCAAAACTTTGAAAAGTTTGAAGAGGCTGACAGCCAGACTCATTCATCATCAAGAGCTGGTCCGTGGAGAAAGATGCTTTCATCTAAGGACTTTAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTAAACGACTATCAAGTTCCTGGGATGGCTGAACTGAAGAAAACCTCCAAACCAAAGAGGCCATCTGTCAAATCGCTGTTTGACGGGGACTCGGAGAGTTGTGATGTGTCTGATATTTCAGATGTGTCTGCAAACAATCAACCTGCTTAA 1608 0.4042 MDSARSWLSKFQPRDRLRASTRKKDDVMGGGEDSDASVDDESLSNVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEESDFSNCQNANGTGQSDDRAGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSREAIDLISKLLCNVSQRLGSNGAVEIKSHSFFEGVQWEKLYQMEAAFTPEVNDELDTQNFEKFEEADSQTHSSSRAGPWRKMLSSKDFNFVGYTYKNFEIVNDYQVPGMAELKKTSKPKRPSVKSLFDGDSESCDVSDISDVSANNQPA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02711 535 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa5g02711 535 CDD STKc_NDR_like 118 482 - -
Vifa5g02711 535 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa5g02711 535 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Vifa5g02711 535 MobiDBLite consensus disorder prediction 500 535 - -
Vifa5g02711 535 CDD MobB_NDR_LATS-like 54 115 - -
Vifa5g02711 535 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Vifa5g02711 535 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02711 535 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02711 535 MobiDBLite consensus disorder prediction 1 44 - -
Vifa5g02711 535 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa5g02711 535 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vifa5g02711 535 Gene3D Phosphorylase Kinase; domain 1 110 205 - -
Vifa5g02711 535 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Vifa5g02711 535 MobiDBLite consensus disorder prediction 9 31 - -
Vifa5g02711 535 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02711 535 SUPERFAMILY Protein kinase-like (PK-like) 93 472 IPR011009 -
Vifa5g02711 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vifa5g02711 535 Gene3D Transferase(Phosphotransferase) domain 1 206 435 - -
Vifa5g02711 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 470 - -
Vifa5g02711 535 MobiDBLite consensus disorder prediction 281 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02711 Vifa-Chr5 903059401 903062622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02711 1 513 AGC Kinase Gene Family AT2G20470 78.571 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa5g02711 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02711 K08790 - gmx:100805940 952.97